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IMGVR_UViG_3300037842_001584-3300037842-Ga0427874_005585_2437_6405

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300037842_001584-3300037842-Ga0427874_005585_2437_6405 ↗
Kingdom:: archaea

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 115-219

PDB

Domain cluster: rep: IMGVR_UViG_3300022912_000775-3300022912-Ga0233430_10159841__D436-543

D2 high residues 222-326

PDB

D3 high residues 333-433

PDB

D4 high residues 436-528

PDB

D5 high residues 543-641

PDB

D6 medium residues 821-896_947-981_1032-1049

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4999742	2004.1.1.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA	0.54	31.0	3.09e-01	79.1%	52.1%

D7 medium residues 897-946_982-1031

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00082.28 best	Peptidase_S8	41.7	1.20e-10	93.0%	22.3%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vv3A00	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.81	77.0	5.16e-01	100.0%	34.0%
2ixtA00	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.79	75.0	5.12e-01	100.0%	42.1%
2w2oA00	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.78	74.0	5.21e-01	100.0%	46.0%
4hvlA00	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.76	72.0	4.73e-01	100.0%	37.4%
4ixjA01	3.30.1300.80	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 ›	0.67	34.0	3.90e-01	92.0%	64.9%
153lA00	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.55	46.0	3.72e-01	90.0%	67.0%
1pu6A01	1.10.1670.10	Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)	0.53	36.0	3.70e-01	70.0%	76.6%
7oufB01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.51	45.0	3.92e-01	95.0%	100.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5006280	2499.1.1.1 ↗	a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8	0.79	75.0	5.58e-01	100.0%	52.3%
4981809	2499.1.1.0 ↗	a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like	0.78	74.0	4.89e-01	100.0%	42.9%
5061762	2499.1.1.1 ↗	a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8	0.78	74.0	4.80e-01	100.0%	39.7%
3302016	103.1.1.2 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE	0.77	32.0	4.51e-01	92.0%	80.0%
3652679	103.1.1.34 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical	0.70	48.0	4.47e-01	71.0%	93.6%
3296126	103.1.1.34 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical	0.60	46.0	4.30e-01	79.0%	94.2%
3625144	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	32.0	3.73e-01	93.0%	72.9%
5084048	3831.1.1.15 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS	0.60	42.0	4.51e-01	72.0%	84.7%
5048048	4957.1.1.9 ↗	a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS	0.59	40.0	4.56e-01	73.0%	93.3%
3677130	103.1.1.34 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical	0.58	44.0	3.92e-01	79.0%	85.9%
3596625	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.56	38.0	4.48e-01	89.0%	100.0%
3492824	103.15.1.1 ↗	alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23	0.56	36.0	3.32e-01	71.0%	52.0%
3594861	2006.1.1.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like	0.52	44.0	3.58e-01	91.0%	93.3%
3596671	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	41.0	2.94e-01	91.0%	45.6%