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IMGVR_UViG_3300037843_000073-3300037843-Ga0427918_0013986_5952_6398
Arc-VirIMGVR_UViG_3300037843_000073-3300037843-Ga0427918_0013986_5952_6398
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-78_91-109
Domain cluster:
rep: IMGVR_UViG_3300041418_000114-3300041418-Ga0439244_0007215_27_332__D7-83
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.84 | 70.0 | 6.31e-01 | 100.0% | 66.7% |
| 5a72A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.82 | 75.0 | 6.24e-01 | 100.0% | 59.2% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.80 | 74.0 | 6.15e-01 | 100.0% | 61.6% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.79 | 61.0 | 5.69e-01 | 80.0% | 67.5% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.75 | 68.0 | 6.12e-01 | 98.9% | 72.7% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 40.0 | 4.08e-01 | 100.0% | 64.5% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.57 | 40.0 | 4.18e-01 | 72.6% | 97.7% |
| 6gpxB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 50.0 | 3.64e-01 | 100.0% | 62.0% |
| 1x4hA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 38.0 | 3.70e-01 | 72.6% | 72.1% |
| 3fgvA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 4.08e-01 | 76.8% | 95.7% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 4.10e-01 | 76.8% | 95.7% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.67e-01 | 72.6% | 88.8% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 38.0 | 3.91e-01 | 72.6% | 94.3% |
| 5mmjv00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 37.0 | 3.96e-01 | 72.6% | 92.5% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.91e-01 | 76.8% | 83.8% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 3.81e-01 | 72.6% | 89.0% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 4.01e-01 | 72.6% | 100.0% |
| 5t9pA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 38.0 | 3.89e-01 | 75.8% | 85.4% |
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.81e-01 | 72.6% | 83.0% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.95e-01 | 76.8% | 89.9% |
| 1jmtA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 36.0 | 3.61e-01 | 72.6% | 94.9% |
| 2jwnA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 36.0 | 3.58e-01 | 72.6% | 73.0% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 36.0 | 3.71e-01 | 72.6% | 80.0% |
| 6ztgA01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.51 | 36.0 | 3.95e-01 | 72.6% | 92.0% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.61e-01 | 76.8% | 89.4% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.64e-01 | 76.8% | 74.8% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.88e-01 | 80.0% | 93.2% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.50 | 39.0 | 2.80e-01 | 95.8% | 27.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4171346 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.86 | 66.0 | 6.03e-01 | 80.0% | 65.0% |
| 4222799 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.85 | 78.0 | 6.48e-01 | 100.0% | 60.0% |
| 1687926 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.82 | 75.0 | 6.24e-01 | 100.0% | 59.2% |
| 3249652 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.81 | 76.0 | 6.64e-01 | 100.0% | 74.8% |
| 5023686 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.81 | 73.0 | 6.44e-01 | 95.8% | 69.2% |
| 3178011 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.81 | 75.0 | 6.48e-01 | 100.0% | 71.4% |
| 169883 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.80 | 74.0 | 6.15e-01 | 100.0% | 61.6% |
| 3178012 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 59.0 | 5.73e-01 | 78.9% | 74.3% |
| 3738339 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.77 | 71.0 | 6.41e-01 | 100.0% | 75.2% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.73 | 51.0 | 5.00e-01 | 77.9% | 65.7% |
| 4993583 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.66 | 51.0 | 4.69e-01 | 93.7% | 65.0% |
| 3965385 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.63 | 44.0 | 5.04e-01 | 72.6% | 97.1% |
| 3972097 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.60 | 42.0 | 4.68e-01 | 72.6% | 90.7% |
| 3783139 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.58 | 43.0 | 4.44e-01 | 78.9% | 93.3% |
| 3744128 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 40.0 | 4.34e-01 | 72.6% | 90.0% |
| 4113985 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.57 | 40.0 | 4.19e-01 | 72.6% | 97.6% |
| 3477897 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.57 | 40.0 | 4.12e-01 | 72.6% | 85.6% |
| 3375878 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 38.0 | 4.20e-01 | 72.6% | 89.3% |
| 4945049 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 38.0 | 3.88e-01 | 72.6% | 73.7% |
| 4394754 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.55 | 38.0 | 3.95e-01 | 77.9% | 76.7% |
| 4323739 | 304.9.1.78 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28978 | 0.54 | 37.0 | 3.38e-01 | 72.6% | 57.0% |
| 3934426 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 39.0 | 3.65e-01 | 78.9% | 80.8% |
| 3810296 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 37.0 | 3.66e-01 | 72.6% | 74.0% |
| 4614439 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.53 | 37.0 | 3.96e-01 | 72.6% | 87.5% |
| 3224221 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 36.0 | 3.63e-01 | 72.6% | 71.0% |
| 3484629 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 37.0 | 3.47e-01 | 72.6% | 64.3% |
| 4028765 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 36.0 | 3.99e-01 | 72.6% | 92.0% |
| 4504275 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.52 | 37.0 | 3.93e-01 | 74.7% | 93.8% |
| 3580419 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.52 | 46.0 | 2.70e-01 | 100.0% | 29.0% |
| 3838247 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.51 | 42.0 | 2.88e-01 | 92.6% | 74.4% |
| 4981191 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.51 | 35.0 | 4.00e-01 | 72.6% | 98.6% |
| 3498350 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 38.0 | 3.76e-01 | 93.7% | 75.0% |
| 5028837 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.51 | 35.0 | 3.91e-01 | 72.6% | 100.0% |
| 5191 | 304.4.1.28 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF6974 | 0.50 | 36.0 | 3.46e-01 | 75.8% | 86.6% |
| 4025659 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.50 | 35.0 | 3.65e-01 | 72.6% | 87.1% |