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IMGVR_UViG_3300038312_000294-3300038312-Ga0134836_000398_18117_18512
Arc-VirIMGVR_UViG_3300038312_000294-3300038312-Ga0134836_000398_18117_18512
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-127
Domain cluster:
rep: JN051154.1__AER59760.1__clP1_001__00001__D30-123
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04883.18 best | HK97-gp10_like | 42.0 | 2.10e-10 | 62.6% | 100.0% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.75 | 50.0 | 4.87e-01 | 93.5% | 61.9% |
| 1ufwA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.69 | 40.0 | 4.53e-01 | 94.3% | 73.7% |
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.68 | 36.0 | 4.48e-01 | 91.1% | 85.9% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.68 | 38.0 | 4.48e-01 | 83.7% | 79.5% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.68 | 35.0 | 4.40e-01 | 87.0% | 84.5% |
| 7qddB01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.67 | 35.0 | 4.32e-01 | 93.5% | 82.2% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 41.0 | 4.58e-01 | 96.7% | 78.4% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.66 | 42.0 | 4.77e-01 | 91.1% | 89.8% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 29.0 | 4.00e-01 | 83.7% | 84.7% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 36.0 | 3.92e-01 | 87.8% | 65.7% |
| 1x4dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 36.0 | 3.90e-01 | 89.4% | 64.7% |
| 3tviA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.63 | 35.0 | 3.26e-01 | 87.0% | 40.9% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.61 | 38.0 | 4.09e-01 | 93.5% | 72.6% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.60 | 29.0 | 3.53e-01 | 74.8% | 70.7% |
| 1s9iB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 29.0 | 3.23e-01 | 78.0% | 57.0% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.60 | 33.0 | 3.63e-01 | 93.5% | 66.3% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 39.0 | 4.23e-01 | 96.7% | 80.4% |
| 7ocxC01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 33.0 | 3.99e-01 | 87.0% | 90.8% |
| 3bfmA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 52.0 | 4.56e-01 | 99.2% | 73.7% |
| 2grvA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.56 | 35.0 | 3.66e-01 | 88.6% | 67.3% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.55 | 31.0 | 3.79e-01 | 85.4% | 86.1% |
| 1cp9B03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.55 | 50.0 | 4.58e-01 | 100.0% | 94.4% |
| 4eqmA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 27.0 | 3.05e-01 | 78.0% | 60.7% |
| 6hlxA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 37.0 | 3.49e-01 | 97.6% | 59.5% |
| 5fqdC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 24.0 | 3.11e-01 | 78.0% | 78.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591115 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.74 | 48.0 | 5.28e-01 | 90.2% | 81.0% |
| 4959923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 37.0 | 4.68e-01 | 91.1% | 85.7% |
| 3894300 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.71 | 52.0 | 5.54e-01 | 93.5% | 88.6% |
| 5040415 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.69 | 41.0 | 4.44e-01 | 90.2% | 69.5% |
| 3714466 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.68 | 39.0 | 4.32e-01 | 90.2% | 71.6% |
| 2679066 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.67 | 32.0 | 4.14e-01 | 90.2% | 81.5% |
| 3284662 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.67 | 42.0 | 4.76e-01 | 93.5% | 85.6% |
| 5064074 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.66 | 44.0 | 4.81e-01 | 93.5% | 83.0% |
| 4950395 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.66 | 40.0 | 4.18e-01 | 91.1% | 66.4% |
| 3936048 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 37.0 | 4.11e-01 | 93.5% | 71.0% |
| 3597457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 46.0 | 5.15e-01 | 100.0% | 96.8% |
| 3700805 | 304.9.1.107 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › FAZ1_cons | 0.64 | 45.0 | 5.16e-01 | 99.2% | 100.0% |
| 3699404 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.64 | 34.0 | 4.09e-01 | 91.1% | 77.5% |
| 3591695 | 375.1.1.207 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons | 0.64 | 45.0 | 5.04e-01 | 96.7% | 97.8% |
| 5023825 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 31.0 | 4.06e-01 | 89.4% | 87.3% |
| 5015090 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.63 | 47.0 | 3.51e-01 | 89.4% | 30.8% |
| 3601019 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 43.0 | 4.93e-01 | 93.5% | 100.0% |
| 4014295 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 34.0 | 3.64e-01 | 93.5% | 59.0% |
| 4995243 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.63 | 37.0 | 4.53e-01 | 90.2% | 96.0% |
| 2834102 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.62 | 41.0 | 4.74e-01 | 100.0% | 95.3% |
| 3997847 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.62 | 42.0 | 4.54e-01 | 91.1% | 84.0% |
| 3488179 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.62 | 42.0 | 4.71e-01 | 99.2% | 95.6% |
| 4024239 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.61 | 54.0 | 5.41e-01 | 100.0% | 95.2% |
| 3280191 | 304.4.1.7 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket | 0.61 | 39.0 | 4.15e-01 | 93.5% | 74.3% |
| 4962207 | 223.11.1.1 ↗ | a+b three layers › Profilin-like › N-terminal domain of Apc beta-subunit › N-terminal domain of Apc beta-subunit › Hydantoinase_B | 0.60 | 46.0 | 3.81e-01 | 81.3% | 92.7% |
| 4945834 | 223.11.1.1 ↗ | a+b three layers › Profilin-like › N-terminal domain of Apc beta-subunit › N-terminal domain of Apc beta-subunit › Hydantoinase_B | 0.59 | 46.0 | 3.81e-01 | 82.1% | 93.2% |
| 4472412 | 223.11.1.1 ↗ | a+b three layers › Profilin-like › N-terminal domain of Apc beta-subunit › N-terminal domain of Apc beta-subunit › Hydantoinase_B | 0.59 | 47.0 | 3.90e-01 | 86.2% | 93.8% |
| 4498936 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.59 | 50.0 | 4.28e-01 | 93.5% | 78.5% |
| 3592351 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.57 | 43.0 | 4.22e-01 | 98.4% | 71.4% |
| 1933419 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 39.0 | 3.86e-01 | 93.5% | 67.4% |
| 5000238 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.55 | 36.0 | 3.70e-01 | 95.9% | 69.6% |
| 3961341 | 304.136.1.0 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain | 0.55 | 33.0 | 3.52e-01 | 85.4% | 66.4% |
| 3931876 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 4.49e-01 | 91.1% | 85.4% |
| 3801090 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.39e-01 | 95.1% | 84.4% |
| 3374795 | 309.1.1.2 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C | 0.52 | 47.0 | 3.75e-01 | 99.2% | 57.1% |
| 3423974 | 309.1.1.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16 | 0.52 | 47.0 | 3.83e-01 | 99.2% | 63.5% |
| 5041953 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 27.0 | 3.55e-01 | 89.4% | 100.0% |