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IMGVR_UViG_3300038313_000408-3300038313-Ga0134846_002775_3421_3516

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300038313_000408-3300038313-Ga0134846_002775_3421_3516 ↗
Kingdom:: archaea

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-31

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x48A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.63	48.0	4.30e-01	96.8%	55.6%
5mx4A00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.62	47.0	2.82e-01	87.1%	55.4%
3canA00	3.80.30.10	Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › pyruvate-formate lyase- activating enzyme	0.61	41.0	2.67e-01	71.0%	13.7%
1pjqA02	3.30.160.110	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain	0.59	44.0	4.33e-01	90.3%	97.2%
1e29A00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.58	42.0	2.81e-01	80.6%	67.4%
3h6eB01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.57	42.0	3.06e-01	87.1%	48.5%
2od0A00	3.30.1460.30	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone	0.56	43.0	3.22e-01	100.0%	97.1%
1i77A00	3.90.10.10	Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3	0.53	40.0	2.94e-01	96.8%	46.7%
4iggB06	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.53	39.0	2.40e-01	100.0%	12.1%
6denA03	3.40.50.970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains	0.52	41.0	2.53e-01	96.8%	72.8%
2a90A02	3.30.720.50	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.52	40.0	3.26e-01	90.3%	44.3%
2a25A01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.50	40.0	4.10e-01	93.5%	100.0%
3w7tA04	3.30.1390.40	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e	0.50	34.0	3.46e-01	83.9%	84.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4940192	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.66	46.0	3.20e-01	74.2%	58.8%
4169550	1056.1.1.1 ↗	a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD	0.65	49.0	3.28e-01	90.3%	19.3%
3289385	3433.1.2.1 ↗	a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer	0.62	44.0	3.88e-01	77.4%	80.0%
3604110	101.1.2.209 ↗	alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd	0.60	46.0	3.63e-01	93.5%	73.3%
4959095	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.60	42.0	4.12e-01	83.9%	67.5%
3937187	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.58	40.0	2.85e-01	71.0%	69.1%
3272848	207.1.1.22 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6	0.54	41.0	2.53e-01	93.5%	23.3%
3907112	1170.1.1.1 ↗	beta barrels › IL8-related › IL8-related › IL8 › IL8	0.52	43.0	3.53e-01	100.0%	47.7%