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IMGVR_UViG_3300038313_000408-3300038313-Ga0134846_002775_8933_9805

Arc-Vir

IMGVR_UViG_3300038313_000408-3300038313-Ga0134846_002775_8933_9805

Identity

Kingdom:
archaea

Quality

72.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-184
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 38.0 3.80e-01 94.4% 52.1%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.68 53.0 5.67e-01 90.1% 95.6%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 53.0 5.66e-01 90.7% 97.2%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 57.0 5.18e-01 92.5% 98.1%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 56.0 5.48e-01 90.7% 100.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 53.0 5.67e-01 89.4% 99.3%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 53.0 5.63e-01 88.8% 100.0%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 57.0 5.15e-01 95.0% 99.5%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.64 43.0 5.05e-01 95.7% 94.8%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 54.0 5.17e-01 88.8% 89.6%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 53.0 4.77e-01 88.2% 87.1%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.62 39.0 4.58e-01 95.0% 91.0%
2zzjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 4.63e-01 91.9% 95.8%
2yyoA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 49.0 4.99e-01 87.6% 93.1%
3tojA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.58 50.0 4.93e-01 93.2% 99.4%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 33.0 3.55e-01 93.2% 69.2%
5fuiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 4.31e-01 93.8% 97.6%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 25.0 3.47e-01 90.7% 97.3%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 35.0 4.06e-01 73.9% 97.4%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 38.0 3.14e-01 76.4% 68.8%
4c08A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 35.0 3.42e-01 70.8% 66.1%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 31.0 3.81e-01 82.6% 98.0%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 3.80e-01 75.2% 98.7%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 36.0 4.03e-01 72.7% 100.0%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.50 38.0 3.19e-01 76.4% 53.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519451 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.66 53.0 5.57e-01 88.2% 93.8%
3214420 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.66 55.0 5.74e-01 93.8% 96.0%
3394965 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.65 54.0 5.08e-01 88.8% 85.0%
3918435 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 54.0 4.48e-01 88.8% 85.4%
3901954 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.65 54.0 5.65e-01 91.9% 97.9%
4013175 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.64 56.0 4.66e-01 95.0% 83.6%
169992 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.64 53.0 4.77e-01 88.2% 87.1%
3928299 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 53.0 5.23e-01 88.2% 83.5%
3178338 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.63 56.0 4.40e-01 95.0% 71.1%
5040182 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 42.0 5.03e-01 94.4% 100.0%
3244250 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.63 52.0 4.42e-01 88.8% 89.4%
999017 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.63 50.0 5.36e-01 86.3% 98.6%
5061086 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.62 55.0 5.14e-01 95.0% 98.5%
3264222 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.62 51.0 4.39e-01 87.6% 92.4%
3251374 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.60 51.0 4.45e-01 90.1% 84.2%
3389939 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 51.0 4.93e-01 90.7% 86.7%
3892035 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.60 49.0 4.61e-01 88.2% 78.5%
4002330 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 49.0 4.55e-01 88.2% 71.5%
3360847 10.32.1.104 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › VIR_N 0.58 43.0 4.87e-01 97.5% 99.2%
3250629 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.58 33.0 4.00e-01 95.0% 84.8%
3314109 10.2.1.74 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › WAK 0.54 47.0 4.76e-01 94.4% 91.9%
4009698 219.1.1.109 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.54 43.0 3.97e-01 86.3% 66.3%
5062952 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.50 35.0 4.02e-01 73.3% 98.3%
D2 medium residues 195-286
PDB