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IMGVR_UViG_3300038313_000458-3300038313-Ga0134846_000033_145609_146220

Arc-Vir

IMGVR_UViG_3300038313_000458-3300038313-Ga0134846_000033_145609_146220

Quality

74.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-104
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.73 58.0 5.56e-01 95.1% 74.1%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.67 56.0 5.02e-01 97.1% 65.2%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.65 53.0 4.37e-01 89.3% 89.0%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 53.0 4.49e-01 87.4% 95.8%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 50.0 4.32e-01 88.3% 54.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 48.0 4.08e-01 86.4% 67.3%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.58 47.0 4.08e-01 89.3% 70.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 46.0 3.96e-01 85.4% 62.2%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 45.0 3.82e-01 83.5% 83.1%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.77e-01 71.8% 95.1%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.57 39.0 3.59e-01 70.9% 96.3%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.76e-01 72.8% 91.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.97e-01 77.7% 95.0%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.93e-01 79.6% 77.5%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.82e-01 77.7% 93.9%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 4.03e-01 84.5% 81.3%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.61e-01 70.9% 75.6%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.74e-01 76.7% 89.3%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.72e-01 73.8% 98.2%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.53 41.0 4.12e-01 84.5% 95.3%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.57e-01 77.7% 69.0%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 38.0 3.54e-01 78.6% 80.1%
2ozgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 46.0 3.99e-01 100.0% 84.8%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.74e-01 80.6% 85.5%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 40.0 3.26e-01 86.4% 67.0%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 38.0 3.59e-01 80.6% 78.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 45.0 3.99e-01 98.1% 88.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.63 50.0 5.24e-01 96.1% 96.7%
5051184 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 48.0 4.81e-01 80.6% 92.4%
4970858 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 54.0 5.35e-01 97.1% 92.7%
3998279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 46.0 4.58e-01 78.6% 87.3%
3482199 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 42.0 2.72e-01 70.9% 20.4%
3510918 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 45.0 4.14e-01 78.6% 91.1%
3471678 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.61 48.0 4.18e-01 87.4% 84.8%
3592067 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.60 39.0 3.22e-01 71.8% 37.2%
4958640 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 50.0 4.25e-01 92.2% 88.5%
3506925 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.60 51.0 4.29e-01 94.2% 79.9%
3447653 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 41.0 2.93e-01 70.9% 33.1%
3799143 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 52.0 4.77e-01 96.1% 96.3%
4017102 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 43.0 4.08e-01 78.6% 86.4%
3430385 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.58 42.0 3.98e-01 76.7% 68.0%
3601826 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 44.0 3.56e-01 80.6% 87.7%
4123284 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.57 40.0 2.63e-01 71.8% 65.3%
3419181 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.57 40.0 2.89e-01 71.8% 33.6%
4461780 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 43.0 3.52e-01 78.6% 89.2%
3703426 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 40.0 2.91e-01 72.8% 29.2%
3598380 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.57 45.0 3.42e-01 86.4% 97.3%
3889557 378.1.1.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.56 45.0 3.63e-01 86.4% 96.6%
4972214 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 51.0 3.28e-01 100.0% 57.9%
5042182 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.56 44.0 4.52e-01 86.4% 99.0%
5800 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 28.0 3.67e-01 75.7% 96.0%
3972242 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.55 40.0 3.50e-01 78.6% 98.2%
4339224 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 48.0 3.97e-01 98.1% 69.7%
3279698 2004.1.1.711 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27531 0.54 40.0 3.26e-01 76.7% 96.3%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 41.0 3.94e-01 80.6% 89.2%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.53 48.0 2.95e-01 99.0% 68.4%
3521727 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.53 41.0 3.47e-01 85.4% 47.6%
3229874 708.1.1.18 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DUF7747 0.52 41.0 3.45e-01 84.5% 61.8%
3983418 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 39.0 3.33e-01 78.6% 80.6%
3719388 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.52 39.0 2.99e-01 78.6% 47.6%
3785535 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 40.0 3.70e-01 81.6% 89.2%
3389299 12.1.1.60 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.52 33.0 3.64e-01 72.8% 81.2%
3344584 5.1.5.98 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › b-prop_At3g26010-like 0.52 39.0 2.97e-01 81.6% 54.2%
1174598 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 39.0 3.65e-01 80.6% 79.4%
4064490 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.51 40.0 3.01e-01 86.4% 79.3%
1176515 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 35.0 2.94e-01 70.9% 73.4%
3458192 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 41.0 2.99e-01 90.3% 58.7%
1286610 2004.1.1.478 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 0.50 41.0 3.66e-01 95.1% 61.9%
3213695 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.50 36.0 3.43e-01 76.7% 91.5%
D2 high residues 110-199
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 40.0 2.58e-01 71.1% 100.0%
2qu8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 3.49e-01 86.7% 69.1%
4e3wA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 41.0 2.84e-01 80.0% 94.5%
4s2rQ03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.55 47.0 3.39e-01 100.0% 87.9%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 3.18e-01 91.1% 77.1%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 31.0 3.66e-01 97.8% 91.7%
2jkdB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 38.0 3.26e-01 80.0% 83.6%
2yijB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.91e-01 98.9% 75.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038450 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.76 69.0 4.87e-01 100.0% 44.8%
3984091 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.68 34.0 3.24e-01 80.0% 41.0%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.66 58.0 5.47e-01 98.9% 90.0%
5052639 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.64 57.0 4.24e-01 100.0% 46.1%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.63 30.0 3.91e-01 70.0% 79.6%
4216985 331.19.1.2 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.62 48.0 5.00e-01 100.0% 88.2%
3906813 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.62 48.0 3.31e-01 84.4% 76.1%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.60 30.0 2.31e-01 100.0% 21.5%
3604387 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.60 49.0 3.32e-01 88.9% 47.9%
4262159 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.58 48.0 3.27e-01 91.1% 37.4%
4928052 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 46.0 3.17e-01 90.0% 34.9%
3600004 10.37.1.0 beta sandwiches › jelly-roll › TerD › TerD 0.53 39.0 3.23e-01 78.9% 80.6%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.53 31.0 3.81e-01 73.3% 90.0%
3500008 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.53 40.0 3.35e-01 80.0% 75.8%
5060431 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 42.0 2.85e-01 90.0% 33.4%
3721003 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 39.0 2.64e-01 81.1% 33.9%
3389782 3470.1.1.53 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › CytochromB561_N 0.52 39.0 3.01e-01 83.3% 38.8%
1906331 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.51 38.0 3.10e-01 80.0% 76.7%
4886802 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.51 30.0 3.18e-01 80.0% 63.9%
3486954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.63e-01 72.2% 88.2%