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IMGVR_UViG_3300038316_000169-3300038316-Ga0134847_000580_31525_32526
Arc-VirIMGVR_UViG_3300038316_000169-3300038316-Ga0134847_000580_31525_32526
Identity
- Kingdom:
- archaea
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-138
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
D2
medium
residues 175-240
Domain cluster:
representative
D3
medium
residues 241-295
Domain cluster:
rep: IMGVR_UViG_3300038313_000238-3300038313-Ga0134846_001011_24364_24954__D107-160
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7e4mA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.82 | 60.0 | 3.72e-01 | 76.4% | 16.9% |
| 1khvA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.73 | 60.0 | 4.52e-01 | 90.9% | 44.6% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.72 | 53.0 | 3.95e-01 | 78.2% | 34.3% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.72 | 47.0 | 4.02e-01 | 72.7% | 43.0% |
| 1bdp002 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.71 | 56.0 | 4.36e-01 | 83.6% | 69.7% |
| 3lkdB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.70 | 57.0 | 3.92e-01 | 89.1% | 51.9% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 47.0 | 4.53e-01 | 72.7% | 76.6% |
| 2kz6A01 | 6.10.140.1310 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 46.0 | 4.12e-01 | 70.9% | 59.3% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 43.0 | 4.04e-01 | 70.9% | 76.5% |
| 5cdhG00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.64 | 54.0 | 3.37e-01 | 96.4% | 85.1% |
| 4b8yA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.63 | 52.0 | 3.79e-01 | 94.5% | 90.9% |
| 3k7lA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.63 | 51.0 | 3.52e-01 | 89.1% | 71.1% |
| 2wa5A01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.62 | 43.0 | 3.55e-01 | 72.7% | 100.0% |
| 2vzcB00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.62 | 49.0 | 3.81e-01 | 89.1% | 92.9% |
| 1wpwA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.61 | 48.0 | 2.96e-01 | 85.5% | 14.3% |
| 3gb0A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 46.0 | 3.02e-01 | 85.5% | 66.3% |
| 3n5fA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.59 | 47.0 | 3.05e-01 | 92.7% | 69.9% |
| 2jbvA04 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.59 | 44.0 | 3.02e-01 | 78.2% | 28.7% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.56 | 39.0 | 3.88e-01 | 72.7% | 89.7% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 3.55e-01 | 96.4% | 79.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3805676 | 1128.1.1.13 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 | 0.81 | 70.0 | 5.90e-01 | 94.5% | 80.0% |
| 3261491 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.79 | 61.0 | 3.52e-01 | 81.8% | 47.6% |
| 3221933 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.77 | 70.0 | 4.48e-01 | 100.0% | 24.4% |
| 4848531 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.76 | 58.0 | 3.56e-01 | 81.8% | 15.4% |
| 4941976 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.75 | 66.0 | 5.27e-01 | 100.0% | 96.4% |
| 3739921 | 1015.1.1.1 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › INSIG | 0.71 | 59.0 | 4.00e-01 | 90.9% | 51.6% |
| 5048383 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.70 | 59.0 | 3.75e-01 | 94.5% | 29.3% |
| 3314636 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 54.0 | 3.63e-01 | 83.6% | 24.4% |
| 3947265 | 109.13.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › MgtE N-terminal domain-like › MgtE N-terminal domain-like › MgtE_N | 0.69 | 40.0 | 2.93e-01 | 74.5% | 24.6% |
| 4560874 | 605.1.1.154 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MARCHF6_C | 0.67 | 61.0 | 4.29e-01 | 100.0% | 42.5% |
| 5062294 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.65 | 54.0 | 3.45e-01 | 94.5% | 28.4% |
| 3702455 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 55.0 | 3.95e-01 | 96.4% | 52.1% |
| 5037494 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.64 | 47.0 | 3.27e-01 | 80.0% | 62.6% |
| 3787068 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 45.0 | 2.90e-01 | 78.2% | 43.7% |
| 4031351 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.58 | 52.0 | 3.81e-01 | 100.0% | 46.9% |
| 3464778 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.56 | 46.0 | 4.06e-01 | 94.5% | 92.9% |
| 3988311 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.54 | 36.0 | 3.32e-01 | 70.9% | 86.7% |