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IMGVR_UViG_3300038316_000210-3300038316-Ga0134847_001382_15821_19906
Arc-VirIMGVR_UViG_3300038316_000210-3300038316-Ga0134847_001382_15821_19906
Identity
- Kingdom:
- archaea
Quality
44.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 85-160
Domain cluster:
rep: IMGVR_UViG_3300028546_000001-3300028546-Ga0307748_124924__D4-78
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.69 | 42.0 | 4.13e-01 | 71.1% | 56.8% |
| 1fkaG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.67 | 58.0 | 4.96e-01 | 98.7% | 78.1% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 41.0 | 3.96e-01 | 72.4% | 55.2% |
| 7uzqK01 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.65 | 57.0 | 3.69e-01 | 100.0% | 25.0% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.64 | 46.0 | 4.31e-01 | 77.6% | 92.8% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 40.0 | 3.93e-01 | 72.4% | 58.5% |
| 3um7B01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 42.0 | 3.89e-01 | 73.7% | 53.6% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 32.0 | 3.11e-01 | 86.8% | 44.6% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.63 | 44.0 | 3.48e-01 | 73.7% | 67.9% |
| 1jqjD03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 44.0 | 4.32e-01 | 94.7% | 69.8% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 41.0 | 3.86e-01 | 75.0% | 58.2% |
| 2wicA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 39.0 | 3.74e-01 | 93.4% | 56.7% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 43.0 | 3.62e-01 | 75.0% | 47.2% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 42.0 | 3.85e-01 | 75.0% | 58.0% |
| 1xqoA01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.59 | 46.0 | 4.06e-01 | 86.8% | 68.6% |
| 4lp8A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 3.70e-01 | 72.4% | 52.9% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.57 | 41.0 | 3.44e-01 | 77.6% | 41.3% |
| 2qksA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 41.0 | 3.66e-01 | 76.3% | 56.6% |
| 3q2qA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 43.0 | 2.94e-01 | 86.8% | 31.2% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.56 | 40.0 | 4.00e-01 | 80.3% | 76.3% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 48.0 | 3.32e-01 | 98.7% | 37.2% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 43.0 | 3.40e-01 | 85.5% | 88.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 46.0 | 4.37e-01 | 97.4% | 94.8% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 44.0 | 3.52e-01 | 90.8% | 61.6% |
| 2igsA00 | 1.10.3690.10 | Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain | 0.53 | 44.0 | 3.32e-01 | 97.4% | 90.2% |
| 3bvxA02 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.52 | 38.0 | 3.38e-01 | 76.3% | 68.5% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 3.45e-01 | 77.6% | 89.1% |
| 4fcgA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.51 | 44.0 | 2.98e-01 | 98.7% | 40.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.92 | 83.0 | 6.42e-01 | 100.0% | 48.0% |
| 4522597 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.84 | 63.0 | 4.18e-01 | 77.6% | 25.8% |
| 4928044 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.84 | 62.0 | 4.17e-01 | 77.6% | 25.8% |
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.81 | 73.0 | 6.04e-01 | 100.0% | 56.9% |
| 3948470 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.72 | 53.0 | 3.62e-01 | 78.9% | 24.3% |
| 4045493 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.72 | 53.0 | 3.59e-01 | 78.9% | 24.3% |
| 2817087 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.71 | 52.0 | 3.53e-01 | 78.9% | 23.4% |
| 3479512 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 55.0 | 5.32e-01 | 97.4% | 74.1% |
| 4014546 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 62.0 | 5.89e-01 | 100.0% | 91.1% |
| 3174828 | 103.4.1.15 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28865 | 0.70 | 59.0 | 5.83e-01 | 97.4% | 91.3% |
| 3983080 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.70 | 54.0 | 3.63e-01 | 82.9% | 86.0% |
| 4074758 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.69 | 53.0 | 3.62e-01 | 82.9% | 89.8% |
| 4985449 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.68 | 43.0 | 4.12e-01 | 72.4% | 56.5% |
| 5013034 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.68 | 42.0 | 4.01e-01 | 72.4% | 53.3% |
| 4013352 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 52.0 | 5.38e-01 | 96.1% | 91.4% |
| 4005910 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.67 | 39.0 | 3.56e-01 | 73.7% | 44.0% |
| 3731591 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 56.0 | 5.53e-01 | 100.0% | 97.5% |
| 4935125 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.64 | 45.0 | 4.35e-01 | 73.7% | 83.5% |
| 3441066 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.64 | 53.0 | 4.38e-01 | 94.7% | 79.7% |
| 3430911 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.63 | 50.0 | 4.94e-01 | 86.8% | 83.7% |
| 3695238 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.62 | 43.0 | 2.83e-01 | 72.4% | 72.3% |
| 353472 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.62 | 44.0 | 3.77e-01 | 73.7% | 49.6% |
| 1758759 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.62 | 44.0 | 3.08e-01 | 73.7% | 25.3% |
| 4193968 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.61 | 42.0 | 3.84e-01 | 72.4% | 55.0% |
| 3242517 | 4009.1.1.3 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 | 0.60 | 44.0 | 4.51e-01 | 81.6% | 86.7% |
| 3521402 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.60 | 42.0 | 2.71e-01 | 73.7% | 17.1% |
| 4793214 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.60 | 42.0 | 3.83e-01 | 75.0% | 57.7% |
| 4379932 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.59 | 42.0 | 2.71e-01 | 73.7% | 16.7% |
| 4973733 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 42.0 | 3.58e-01 | 73.7% | 46.7% |
| 4018193 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.59 | 49.0 | 2.91e-01 | 89.5% | 44.0% |
| 4919 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 42.0 | 3.28e-01 | 75.0% | 36.3% |
| 3621952 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.59 | 44.0 | 2.83e-01 | 78.9% | 30.6% |
| 3506917 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 40.0 | 2.89e-01 | 72.4% | 30.2% |
| 3715729 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 45.0 | 2.85e-01 | 92.1% | 15.9% |
| 1510733 | 5054.1.1.5 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › IRK | 0.56 | 41.0 | 3.55e-01 | 76.3% | 52.2% |
| 5015474 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.55 | 39.0 | 3.68e-01 | 75.0% | 85.3% |
| 3484839 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.53 | 37.0 | 3.36e-01 | 94.7% | 51.8% |
| 2811986 | 109.4.1.1132 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TVHS-like | 0.52 | 38.0 | 3.46e-01 | 77.6% | 59.8% |
| 3729102 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.51 | 41.0 | 2.61e-01 | 89.5% | 43.0% |
| 3967188 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.51 | 42.0 | 2.69e-01 | 93.4% | 77.6% |
| 4525674 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.50 | 43.0 | 2.72e-01 | 97.4% | 77.7% |
D2
medium
residues 247-276_389-438
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sxdA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.63 | 38.0 | 3.65e-01 | 90.0% | 51.6% |
| 1ji7A00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.60 | 37.0 | 3.84e-01 | 87.5% | 64.9% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 41.0 | 3.67e-01 | 71.2% | 87.6% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.57 | 41.0 | 3.51e-01 | 76.2% | 68.4% |
| 1urjA03 | 1.10.150.560 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.56 | 38.0 | 3.86e-01 | 71.2% | 100.0% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 35.0 | 4.09e-01 | 86.3% | 96.2% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 39.0 | 3.19e-01 | 80.0% | 68.1% |
| 1a49A01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.52 | 42.0 | 3.36e-01 | 91.3% | 69.9% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 40.0 | 2.92e-01 | 86.3% | 72.4% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.51 | 40.0 | 3.70e-01 | 88.7% | 83.6% |
| 1chkA01 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.51 | 43.0 | 3.65e-01 | 97.5% | 87.4% |
| 3ei3A04 | 1.10.150.910 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 40.0 | 3.99e-01 | 90.0% | 100.0% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 33.0 | 3.13e-01 | 100.0% | 52.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.89 | 82.0 | 5.90e-01 | 100.0% | 45.7% |
| 3501764 | 102.1.1.7 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_PNT | 0.62 | 40.0 | 3.59e-01 | 87.5% | 46.4% |
| 3407286 | 102.1.1.7 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_PNT | 0.60 | 39.0 | 3.73e-01 | 87.5% | 55.8% |
| 3379162 | 148.1.3.227 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7750 | 0.57 | 36.0 | 3.77e-01 | 82.5% | 71.4% |
| 3266281 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.56 | 48.0 | 3.26e-01 | 98.8% | 85.8% |
| 3719809 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.50 | 38.0 | 3.61e-01 | 98.8% | 68.0% |
D3
medium
residues 1225-1281