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IMGVR_UViG_3300038317_000232-3300038317-Ga0134849_004747_5130_5927

Arc-Vir

IMGVR_UViG_3300038317_000232-3300038317-Ga0134849_004747_5130_5927

Identity

Kingdom:
archaea

Quality

71.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 209-263
PDB
Domain cluster: rep: IMGVR_UViG_3300038321_000303-3300038321-Ga0134857_003002_3664_6105__D761-811
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.73 50.0 5.62e-01 81.8% 100.0%
2ffwA00 4.10.830.40 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › 0.67 48.0 4.23e-01 76.4% 52.6%
1xa6A02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.65 52.0 4.85e-01 89.1% 71.0%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 50.0 5.21e-01 89.1% 96.1%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 39.0 3.59e-01 96.4% 56.9%
1kbeA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 39.0 4.08e-01 87.3% 89.8%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.54 42.0 3.26e-01 90.9% 64.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4853380 376.1.1.35 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 0.75 61.0 5.31e-01 90.9% 58.8%
3706881 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.75 61.0 5.27e-01 89.1% 76.5%
3813196 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.72 50.0 5.51e-01 78.2% 100.0%
3759578 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.72 49.0 4.76e-01 76.4% 65.0%
3700774 376.1.2.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF26235 0.69 54.0 5.25e-01 83.6% 91.7%
3550389 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.69 52.0 5.26e-01 89.1% 81.8%
3819552 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.69 54.0 5.44e-01 87.3% 92.7%
3243705 377.1.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.68 49.0 5.07e-01 81.8% 84.0%
3508600 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.68 52.0 5.39e-01 89.1% 92.0%
3622009 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 53.0 4.78e-01 90.9% 65.0%
3820281 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 51.0 5.27e-01 83.6% 100.0%
3854151 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 52.0 4.65e-01 89.1% 66.3%
3629373 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.66 53.0 5.20e-01 89.1% 86.7%
3895908 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 48.0 5.17e-01 83.6% 97.8%
3238073 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.66 53.0 5.19e-01 89.1% 85.0%
3394476 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.65 49.0 5.04e-01 90.9% 90.6%
3867531 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.64 52.0 4.66e-01 90.9% 63.7%
3625637 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.64 48.0 5.03e-01 89.1% 94.0%
3644208 902.1.1.3 ↗ few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen › BAP 0.64 39.0 4.53e-01 85.5% 97.1%
3845514 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.62 50.0 4.89e-01 89.1% 83.3%
3541495 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 45.0 4.67e-01 89.1% 91.7%
3232866 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 50.0 4.82e-01 94.5% 96.9%
3540261 376.1.2.28 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS 0.61 49.0 4.97e-01 96.4% 96.4%
3178002 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.59 34.0 2.37e-01 89.1% 18.0%
4275625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.56 43.0 4.26e-01 96.4% 78.3%
3923660 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 39.0 4.16e-01 96.4% 91.1%
3877265 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.54 48.0 3.49e-01 98.2% 35.9%
3403368 219.1.1.91 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › EDR1 0.51 45.0 2.82e-01 100.0% 24.1%
D2 medium residues 75-151
PDB
Domain cluster: rep: IMGVR_UViG_3300033781_000034-3300033781-Ga0326759_00004_125332_128028__D740-834
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03288.23 best Pox_D5 31.2 3.30e-07 98.7% 68.6%
PF02257.22 RFX_DNA_binding 27.4 5.90e-06 88.3% 63.3%