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IMGVR_UViG_3300038318_000399-3300038318-Ga0134855_001111_31781_32239

Arc-Vir

IMGVR_UViG_3300038318_000399-3300038318-Ga0134855_001111_31781_32239

Identity

Kingdom:
archaea

Quality

64.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-68
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r01A02 2.20.180.10 Mainly Beta › Single Sheet › putative fmn-dependent nitroreductase like fold › putative fmn-dependent nitroreductase like domains 0.69 36.0 4.13e-01 100.0% 66.7%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.69 59.0 5.26e-01 100.0% 83.1%
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 48.0 4.52e-01 76.8% 91.2%
3gg6A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 3.93e-01 100.0% 54.9%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 48.0 3.65e-01 98.2% 52.3%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 48.0 3.87e-01 100.0% 64.8%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 47.0 3.63e-01 100.0% 62.2%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 43.0 3.44e-01 83.9% 99.2%
2v8iA02 2.30.30.880 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.90e-01 96.4% 77.4%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.64e-01 100.0% 64.5%
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.55 42.0 3.47e-01 100.0% 44.9%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 43.0 3.42e-01 100.0% 66.0%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.25e-01 100.0% 50.6%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.53 36.0 2.76e-01 73.2% 61.0%
3edsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.38e-01 100.0% 62.4%
1v8qA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 36.0 3.43e-01 100.0% 62.1%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 37.0 3.44e-01 82.1% 98.7%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 43.0 3.95e-01 100.0% 97.5%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.51 43.0 3.48e-01 100.0% 67.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 3.84e-01 87.5% 100.0%
3ng2B00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 30.0 2.93e-01 100.0% 47.8%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.50 33.0 3.34e-01 100.0% 70.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3842593 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.63 53.0 3.73e-01 100.0% 46.2%
3991020 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.63 37.0 3.34e-01 94.6% 44.0%
3410509 221.1.1.60 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_5 0.61 52.0 4.58e-01 98.2% 87.1%
135447 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 51.0 3.83e-01 100.0% 53.6%
4618820 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.60 51.0 3.90e-01 98.2% 66.7%
3247149 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 51.0 4.52e-01 100.0% 87.1%
4937959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 50.0 3.97e-01 100.0% 65.6%
3581304 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.59 36.0 3.63e-01 96.4% 60.0%
3797550 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.58 35.0 3.06e-01 96.4% 38.8%
5058482 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 48.0 3.73e-01 100.0% 62.1%
3605971 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 48.0 3.95e-01 100.0% 95.5%
4992391 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 37.0 2.48e-01 71.4% 60.4%
3329411 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 36.0 3.76e-01 83.9% 72.0%
151096 4050.1.1.2 ↗ few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F-actin_cap_A 0.55 41.0 4.31e-01 100.0% 93.9%
3817332 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 32.0 3.07e-01 100.0% 46.2%
1558018 4091.1.1.1 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.55 37.0 2.92e-01 71.4% 81.5%
3264605 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 46.0 4.25e-01 100.0% 92.0%
4661211 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.54 36.0 2.44e-01 71.4% 62.7%
5005012 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.53 42.0 3.90e-01 94.6% 100.0%
3956932 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.53 36.0 2.40e-01 71.4% 63.0%
3331318 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.53 32.0 3.06e-01 100.0% 50.8%
4096999 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.51 34.0 3.31e-01 100.0% 60.0%
4995715 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.79e-01 100.0% 71.0%
4036512 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.51 41.0 2.95e-01 92.9% 38.9%
3273181 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.50 35.0 2.29e-01 73.2% 53.3%
3573046 389.1.3.37 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › JAMP 0.50 32.0 3.29e-01 100.0% 65.5%
D2 medium residues 96-152
PDB