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IMGVR_UViG_3300038318_000414-3300038318-Ga0134855_001783_10851_11018
Arc-VirIMGVR_UViG_3300038318_000414-3300038318-Ga0134855_001783_10851_11018
Identity
- Kingdom:
- archaea
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-52
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.83 | 60.0 | 4.20e-01 | 75.0% | 27.9% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 71.0 | 5.43e-01 | 97.5% | 91.8% |
| 3ic3A01 | 3.30.2370.10 | Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase | 0.78 | 59.0 | 5.01e-01 | 85.0% | 51.6% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.77 | 58.0 | 3.48e-01 | 100.0% | 12.3% |
| 2yo2A02 | 6.10.250.2030 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 64.0 | 5.55e-01 | 100.0% | 63.3% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 62.0 | 4.85e-01 | 97.5% | 86.7% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.74 | 41.0 | 4.36e-01 | 80.0% | 58.3% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.70 | 55.0 | 3.19e-01 | 92.5% | 14.3% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.69 | 54.0 | 3.91e-01 | 87.5% | 30.3% |
| 1t3uA01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.69 | 59.0 | 5.75e-01 | 92.5% | 97.7% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 54.0 | 3.73e-01 | 92.5% | 34.1% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.65 | 45.0 | 2.71e-01 | 92.5% | 9.3% |
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.65 | 44.0 | 3.79e-01 | 70.0% | 45.9% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.63 | 49.0 | 3.57e-01 | 87.5% | 34.8% |
| 4ottA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.62 | 53.0 | 3.72e-01 | 97.5% | 66.1% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.61 | 38.0 | 2.36e-01 | 77.5% | 9.5% |
| 3s6xC02 | 6.10.250.3380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 38.0 | 4.24e-01 | 82.5% | 89.7% |
| 6n59A02 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 3.20e-01 | 70.0% | 38.1% |
| 4hltA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 41.0 | 2.80e-01 | 77.5% | 87.1% |
| 2itaA01 | 1.20.5.920 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein | 0.58 | 45.0 | 4.23e-01 | 97.5% | 73.2% |
| 5jpoD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 34.0 | 2.69e-01 | 70.0% | 26.8% |
| 1fw8A01 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.56 | 46.0 | 2.96e-01 | 95.0% | 69.8% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 3.17e-01 | 82.5% | 38.6% |
| 1b48A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 40.0 | 3.08e-01 | 77.5% | 70.8% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.53 | 45.0 | 2.99e-01 | 95.0% | 40.9% |
| 3h6eB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 39.0 | 2.97e-01 | 87.5% | 52.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614763 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.87 | 78.0 | 5.45e-01 | 100.0% | 33.3% |
| 3808578 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.84 | 74.0 | 6.04e-01 | 100.0% | 54.1% |
| 3057652 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.70 | 48.0 | 2.73e-01 | 72.5% | 7.1% |
| 3959827 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.69 | 64.0 | 3.81e-01 | 100.0% | 16.1% |
| 3738071 | 129.1.1.51 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N | 0.66 | 47.0 | 3.14e-01 | 95.0% | 17.9% |
| 3786451 | 327.5.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 | 0.65 | 46.0 | 2.99e-01 | 75.0% | 27.2% |
| 4033074 | 2008.1.1.83 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1064 | 0.65 | 53.0 | 3.78e-01 | 95.0% | 86.8% |
| 3960493 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.63 | 47.0 | 3.45e-01 | 85.0% | 27.2% |
| 3965440 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 3.81e-01 | 82.5% | 50.9% |