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IMGVR_UViG_3300038318_000414-3300038318-Ga0134855_001783_19755_20009
Arc-VirIMGVR_UViG_3300038318_000414-3300038318-Ga0134855_001783_19755_20009
Identity
- Kingdom:
- archaea
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-74
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.66 | 36.0 | 4.09e-01 | 86.3% | 70.9% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.59 | 40.0 | 4.52e-01 | 93.2% | 98.1% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.58 | 34.0 | 3.74e-01 | 86.3% | 71.4% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 36.0 | 3.00e-01 | 72.6% | 34.3% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.57 | 51.0 | 3.27e-01 | 100.0% | 32.0% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 4.35e-01 | 82.2% | 87.3% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 46.0 | 4.00e-01 | 98.6% | 56.7% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.56 | 39.0 | 3.42e-01 | 84.9% | 48.1% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 35.0 | 3.73e-01 | 71.2% | 72.3% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.55 | 38.0 | 3.42e-01 | 71.2% | 77.4% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.55 | 40.0 | 4.09e-01 | 80.8% | 81.4% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 41.0 | 3.68e-01 | 86.3% | 86.8% |
| 5yjlC02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.53 | 43.0 | 3.78e-01 | 95.9% | 60.4% |
| 4xq7A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 37.0 | 3.00e-01 | 84.9% | 35.9% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.52 | 39.0 | 3.64e-01 | 80.8% | 68.4% |
| 3s8kB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 43.0 | 3.37e-01 | 98.6% | 96.7% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 44.0 | 3.33e-01 | 98.6% | 46.1% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.51 | 36.0 | 3.47e-01 | 76.7% | 77.3% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.38e-01 | 89.0% | 75.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3583597 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 50.0 | 4.73e-01 | 89.0% | 65.6% |
| 3926624 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.65 | 38.0 | 4.46e-01 | 89.0% | 86.0% |
| 3276465 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.64 | 44.0 | 3.18e-01 | 83.6% | 25.4% |
| 4952930 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.64 | 46.0 | 4.43e-01 | 76.7% | 75.3% |
| 3579466 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.62 | 43.0 | 4.76e-01 | 86.3% | 98.2% |
| 3422058 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.62 | 50.0 | 3.41e-01 | 87.7% | 29.6% |
| 3701625 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.60 | 35.0 | 4.16e-01 | 74.0% | 91.1% |
| 3591046 | 2002.3.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 | 0.57 | 46.0 | 2.97e-01 | 86.3% | 67.3% |
| 3965157 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.57 | 47.0 | 3.54e-01 | 93.2% | 59.5% |
| 3994644 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 45.0 | 2.59e-01 | 89.0% | 14.7% |
| 4031789 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.57 | 34.0 | 3.63e-01 | 83.6% | 70.0% |
| 3934170 | 241.4.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom | 0.57 | 38.0 | 3.52e-01 | 83.6% | 53.7% |
| 3179178 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.56 | 40.0 | 2.78e-01 | 78.1% | 81.4% |
| 3388541 | 241.4.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom | 0.56 | 39.0 | 3.58e-01 | 84.9% | 55.8% |
| 4544568 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.56 | 46.0 | 4.08e-01 | 93.2% | 92.7% |
| 3387119 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.55 | 42.0 | 3.98e-01 | 84.9% | 66.7% |
| 3606500 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.55 | 38.0 | 4.04e-01 | 74.0% | 98.3% |
| 3907533 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.54 | 31.0 | 3.66e-01 | 71.2% | 97.5% |
| 3983052 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.53 | 45.0 | 3.09e-01 | 91.8% | 61.6% |
| 4079885 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.53 | 42.0 | 3.93e-01 | 90.4% | 77.9% |
| 5072279 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.53 | 40.0 | 2.58e-01 | 83.6% | 37.4% |
| 4946972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 3.84e-01 | 83.6% | 71.1% |
| 3656952 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 39.0 | 3.42e-01 | 79.5% | 88.7% |
| 3370517 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.52 | 42.0 | 3.32e-01 | 90.4% | 58.1% |
| 5069121 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.52 | 34.0 | 3.65e-01 | 74.0% | 81.7% |
| 4324611 | 2008.1.1.166 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XcyI | 0.51 | 41.0 | 2.77e-01 | 91.8% | 38.4% |
| 3518153 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.51 | 39.0 | 3.38e-01 | 89.0% | 53.6% |
| 3614518 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.50 | 36.0 | 2.32e-01 | 78.1% | 73.1% |