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IMGVR_UViG_3300038319_000047-3300038319-Ga0246005_003782_1234_2169

Arc-Vir

IMGVR_UViG_3300038319_000047-3300038319-Ga0246005_003782_1234_2169

Identity

Kingdom:
archaea

Quality

66.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 119-132_137-217
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.72 37.0 4.36e-01 74.7% 70.6%
3dmqA08 6.10.140.1500 Special › Helix non-globular › Helix Hairpins › 0.70 31.0 3.37e-01 100.0% 47.5%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.64 34.0 3.30e-01 80.0% 45.4%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 50.0 5.16e-01 85.3% 88.9%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.61 43.0 3.36e-01 72.6% 95.5%
2uuzB00 1.10.10.2020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam 0.61 39.0 4.12e-01 84.2% 72.9%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.60 44.0 4.81e-01 82.1% 100.0%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.58 42.0 3.51e-01 96.8% 45.2%
1fkmA02 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.57 44.0 4.00e-01 85.3% 61.7%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.56 39.0 4.38e-01 81.1% 94.6%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 41.0 3.76e-01 77.9% 87.2%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 38.0 3.48e-01 71.6% 82.7%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 39.0 3.66e-01 75.8% 95.7%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 38.0 4.04e-01 82.1% 85.5%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.53 29.0 3.47e-01 75.8% 81.0%
3qygB01 1.10.472.20 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit 0.53 36.0 3.41e-01 91.6% 57.6%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 34.0 3.72e-01 75.8% 80.5%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 38.0 3.10e-01 76.8% 82.4%
5tcsA01 1.10.418.30 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Ncd80 subunit 0.52 37.0 3.60e-01 75.8% 96.3%
1wkbA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 38.0 2.52e-01 78.9% 62.5%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.51 34.0 3.65e-01 74.7% 80.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4505595 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.68 49.0 4.83e-01 73.7% 84.0%
3718035 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 39.0 4.66e-01 72.6% 86.2%
3980046 101.1.1.22 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.65 51.0 5.16e-01 83.2% 88.4%
5043127 2485.1.1.88 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › VSR_TRX 0.63 48.0 3.72e-01 82.1% 44.1%
4027480 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.58 44.0 3.80e-01 89.5% 52.4%
3963819 4338.1.1.1 ↗ alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › DUF615 0.58 42.0 4.63e-01 81.1% 100.0%
5074535 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 39.0 3.60e-01 70.5% 93.3%
4881805 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 40.0 4.33e-01 83.2% 86.4%
3373525 5073.1.1.4 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C,Cation_ATPase_N 0.57 43.0 2.76e-01 80.0% 40.0%
3933560 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.57 43.0 3.47e-01 82.1% 89.2%
1674680 4085.1.1.1 ↗ alpha arrays › RbcX-like › RbcX-like › RbcX-like › RbcX 0.57 43.0 4.07e-01 83.2% 78.8%
4970998 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.53 39.0 3.87e-01 77.9% 95.0%
4934610 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 41.0 4.32e-01 93.7% 96.5%
5004728 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 43.0 4.26e-01 91.6% 100.0%
3587898 101.1.2.214 ↗ alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.51 44.0 4.05e-01 93.7% 92.5%