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IMGVR_UViG_3300038321_000129-3300038321-Ga0134857_001033_13089_13580

Arc-Vir

IMGVR_UViG_3300038321_000129-3300038321-Ga0134857_001033_13089_13580

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-21_83-157
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.78 62.0 6.14e-01 83.7% 89.5%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.76 62.0 4.94e-01 87.0% 48.9%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.75 62.0 4.93e-01 87.0% 45.7%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.73 57.0 4.63e-01 82.6% 50.6%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 58.0 5.26e-01 83.7% 67.5%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 55.0 4.58e-01 83.7% 90.6%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 54.0 4.90e-01 83.7% 67.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 51.0 4.62e-01 84.8% 64.0%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.09e-01 71.7% 71.6%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 36.0 3.79e-01 70.7% 63.4%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 40.0 4.41e-01 85.9% 81.3%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.61 39.0 4.11e-01 71.7% 72.0%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.61 34.0 3.11e-01 70.7% 39.7%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.61 43.0 3.97e-01 75.0% 93.5%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 45.0 4.39e-01 82.6% 91.4%
2g1dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 44.0 4.39e-01 78.3% 74.5%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 45.0 4.58e-01 81.5% 88.0%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 3.98e-01 71.7% 71.8%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.90e-01 79.3% 66.0%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 3.80e-01 71.7% 81.7%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 44.0 3.96e-01 81.5% 66.7%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 34.0 3.65e-01 73.9% 67.5%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 41.0 4.33e-01 84.8% 82.9%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.57 43.0 3.50e-01 81.5% 43.1%
2p0lA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 51.0 3.69e-01 100.0% 72.2%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 42.0 3.45e-01 79.3% 76.2%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 41.0 4.06e-01 76.1% 94.7%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 38.0 3.81e-01 80.4% 69.1%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 3.20e-01 82.6% 40.0%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 39.0 3.89e-01 88.0% 69.0%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.80e-01 80.4% 65.5%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 3.64e-01 80.4% 67.2%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.25e-01 78.3% 74.3%
2oo4A02 3.30.70.3310 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.75e-01 77.2% 97.3%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 33.0 3.66e-01 77.2% 78.9%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 4.03e-01 80.4% 77.3%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.54 36.0 3.53e-01 73.9% 61.5%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 4.12e-01 81.5% 83.7%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 4.06e-01 77.2% 98.8%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 40.0 2.64e-01 81.5% 22.3%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 4.02e-01 80.4% 84.7%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 39.0 3.95e-01 83.7% 77.9%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 2.94e-01 76.1% 81.4%
3iylW02 3.55.60.10 Alpha Beta › 3-Layer(bab) Sandwich › Reovirus components fold › Reovirus components 0.52 42.0 3.64e-01 90.2% 83.8%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.70e-01 79.3% 67.6%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 2.95e-01 70.7% 68.7%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.52 40.0 3.75e-01 84.8% 87.2%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.03e-01 72.8% 78.6%
5heeA00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.51 39.0 2.91e-01 83.7% 97.7%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.51 36.0 3.15e-01 72.8% 75.0%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.75e-01 77.2% 100.0%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.89e-01 73.9% 100.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.17e-01 79.3% 70.2%
4c98A01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 3.31e-01 71.7% 61.0%
3v97A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 2.98e-01 83.7% 40.8%
2f06A00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.50 39.0 3.42e-01 84.8% 59.0%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 59.0 6.45e-01 82.6% 90.7%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 58.0 5.92e-01 80.4% 98.9%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.75 58.0 5.91e-01 80.4% 98.9%
5002662 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 59.0 5.79e-01 83.7% 79.0%
3968713 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.75 57.0 5.84e-01 80.4% 97.8%
4393593 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.74 59.0 5.84e-01 83.7% 97.9%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 56.0 5.05e-01 80.4% 61.6%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.73 58.0 5.60e-01 84.8% 98.1%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 50.0 5.77e-01 75.0% 100.0%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.72 58.0 5.91e-01 84.8% 95.6%
4988103 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 57.0 5.68e-01 83.7% 94.7%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.71 58.0 5.86e-01 87.0% 97.8%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.71 57.0 5.13e-01 85.9% 94.4%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 52.0 5.13e-01 83.7% 73.0%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.68 51.0 5.26e-01 79.3% 100.0%
4482805 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.68 54.0 4.19e-01 84.8% 64.6%
3237442 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 52.0 5.06e-01 83.7% 74.0%
4205520 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 44.0 4.51e-01 77.2% 68.9%
4298844 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 44.0 4.35e-01 77.2% 64.2%
3815383 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 44.0 4.60e-01 78.3% 72.9%
3285929 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 44.0 4.44e-01 78.3% 68.9%
5043867 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 37.0 4.08e-01 71.7% 68.0%
3970830 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 58.0 5.69e-01 95.7% 90.0%
3639132 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 53.0 4.35e-01 87.0% 67.9%
3445191 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 40.0 4.37e-01 75.0% 74.7%
5051036 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.65 53.0 4.08e-01 85.9% 57.9%
3386922 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 43.0 4.60e-01 80.4% 78.8%
3329478 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 44.0 4.04e-01 78.3% 54.2%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.64 49.0 5.24e-01 83.7% 93.8%
3364258 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.63 42.0 4.34e-01 79.3% 71.6%
3308135 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 42.0 4.28e-01 79.3% 70.0%
3602523 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.62 39.0 4.07e-01 80.4% 68.2%
3299946 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.61 48.0 4.47e-01 84.8% 68.7%
3435075 1.1.9.4 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.59 47.0 3.64e-01 87.0% 51.2%
4963927 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 43.0 3.82e-01 76.1% 68.5%
3900933 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.59 43.0 3.79e-01 81.5% 51.4%
3592426 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 44.0 2.86e-01 81.5% 20.0%
4105300 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.58 38.0 3.77e-01 71.7% 64.2%
5018490 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 41.0 3.72e-01 73.9% 91.2%
4236755 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.57 36.0 3.65e-01 76.1% 63.8%
3500523 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 48.0 3.45e-01 96.7% 88.1%
3264977 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.55 41.0 3.79e-01 79.3% 63.3%
3635619 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 42.0 3.20e-01 81.5% 40.9%
3917309 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.54 41.0 2.86e-01 81.5% 28.1%
4304504 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.54 38.0 3.71e-01 71.7% 86.0%
3510650 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.54 36.0 3.53e-01 73.9% 62.6%
4931484 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 3.12e-01 80.4% 61.8%
4116290 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.54 39.0 3.82e-01 76.1% 81.0%
4958221 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 39.0 2.80e-01 77.2% 40.0%
3516283 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 38.0 4.23e-01 73.9% 97.1%
3967308 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 40.0 3.31e-01 79.3% 52.1%
4061575 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.53 34.0 3.48e-01 71.7% 66.7%
3506871 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 42.0 2.75e-01 89.1% 58.9%
4069712 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 41.0 3.27e-01 85.9% 72.0%
4643984 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.52 41.0 3.21e-01 87.0% 87.1%
4475204 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.52 42.0 3.11e-01 90.2% 79.2%
4274127 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.52 38.0 3.71e-01 77.2% 87.9%
3516834 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 41.0 2.93e-01 88.0% 39.3%
4246888 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.51 41.0 3.01e-01 87.0% 69.2%
3224690 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.51 40.0 2.88e-01 87.0% 47.6%
3354243 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.50 38.0 2.73e-01 81.5% 26.6%
D2 high residues 27-80
PDB