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IMGVR_UViG_3300038321_000129-3300038321-Ga0134857_001033_27956_28321
Arc-VirIMGVR_UViG_3300038321_000129-3300038321-Ga0134857_001033_27956_28321
Identity
- Kingdom:
- archaea
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-35
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 54.0 | 3.81e-01 | 100.0% | 26.2% |
| 2o6kA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.68 | 54.0 | 4.44e-01 | 100.0% | 45.8% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.60 | 51.0 | 3.98e-01 | 100.0% | 48.6% |
| 1t0tV02 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.59 | 45.0 | 3.24e-01 | 90.9% | 74.8% |
| 7t2rC01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.59 | 40.0 | 3.58e-01 | 81.8% | 42.1% |
D2
medium
residues 39-80
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.98 | 93.0 | 5.71e-01 | 100.0% | 21.2% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.98 | 83.0 | 8.05e-01 | 90.5% | 84.8% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.96 | 78.0 | 7.46e-01 | 85.7% | 76.6% |
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.96 | 88.0 | 5.04e-01 | 100.0% | 12.1% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.96 | 89.0 | 7.32e-01 | 100.0% | 62.3% |
| 4fymF00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.95 | 84.0 | 5.17e-01 | 95.2% | 19.1% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.95 | 84.0 | 7.77e-01 | 95.2% | 78.4% |
| 2yxyA01 | 1.10.287.880 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain | 0.94 | 83.0 | 7.81e-01 | 95.2% | 80.0% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.94 | 86.0 | 5.34e-01 | 100.0% | 21.3% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.94 | 86.0 | 5.75e-01 | 100.0% | 29.6% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.94 | 87.0 | 6.13e-01 | 100.0% | 38.1% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.94 | 81.0 | 5.45e-01 | 92.9% | 29.1% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.94 | 85.0 | 5.89e-01 | 100.0% | 34.7% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.93 | 84.0 | 5.45e-01 | 100.0% | 25.1% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.93 | 84.0 | 5.61e-01 | 100.0% | 29.2% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.92 | 75.0 | 7.17e-01 | 88.1% | 91.7% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.92 | 83.0 | 7.70e-01 | 100.0% | 80.8% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.91 | 82.0 | 5.49e-01 | 100.0% | 28.9% |
| 2fjcB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.91 | 82.0 | 5.39e-01 | 100.0% | 27.6% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.91 | 78.0 | 5.60e-01 | 95.2% | 36.3% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.90 | 80.0 | 6.48e-01 | 97.6% | 56.0% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.90 | 81.0 | 5.68e-01 | 100.0% | 35.5% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.89 | 79.0 | 5.24e-01 | 100.0% | 26.4% |
| 2wwxB00 | 1.20.1260.70 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.89 | 78.0 | 4.93e-01 | 100.0% | 21.0% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.89 | 79.0 | 6.06e-01 | 100.0% | 46.2% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.89 | 81.0 | 6.11e-01 | 100.0% | 46.7% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.88 | 78.0 | 5.25e-01 | 100.0% | 28.4% |
| 6fdpA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.88 | 68.0 | 4.85e-01 | 85.7% | 30.0% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.88 | 78.0 | 5.81e-01 | 100.0% | 42.2% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.88 | 70.0 | 6.11e-01 | 88.1% | 60.3% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.87 | 80.0 | 5.42e-01 | 100.0% | 31.3% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.87 | 76.0 | 5.12e-01 | 100.0% | 28.5% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.86 | 75.0 | 4.92e-01 | 100.0% | 24.0% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.86 | 74.0 | 4.71e-01 | 100.0% | 20.4% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 77.0 | 6.59e-01 | 100.0% | 65.2% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.85 | 66.0 | 5.98e-01 | 85.7% | 63.6% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.85 | 75.0 | 5.98e-01 | 100.0% | 52.4% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.83 | 72.0 | 5.91e-01 | 97.6% | 56.0% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.81 | 73.0 | 6.27e-01 | 100.0% | 67.2% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 62.0 | 5.64e-01 | 85.7% | 63.6% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.79 | 68.0 | 6.25e-01 | 100.0% | 82.1% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 63.0 | 5.94e-01 | 92.9% | 78.4% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.77 | 57.0 | 3.92e-01 | 81.0% | 24.6% |
| 1z5zA02 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.75 | 60.0 | 5.03e-01 | 100.0% | 51.3% |
| 3dwcA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.71 | 56.0 | 3.23e-01 | 100.0% | 8.4% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 49.0 | 4.91e-01 | 83.3% | 81.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930198 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 1.00 | 94.0 | 8.15e-01 | 100.0% | 70.0% |
| 3976258 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.99 | 94.0 | 8.39e-01 | 100.0% | 76.4% |
| 4235024 | 109.4.1.2782 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, PF30363, PF30475 | 0.99 | 93.0 | 5.00e-01 | 100.0% | 6.5% |
| 4930709 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.97 | 90.0 | 5.59e-01 | 100.0% | 21.5% |
| 4963289 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.97 | 90.0 | 5.59e-01 | 100.0% | 22.1% |
| 4966900 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.97 | 90.0 | 7.57e-01 | 100.0% | 64.6% |
| 3527992 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.96 | 89.0 | 7.29e-01 | 100.0% | 60.0% |
| 3262528 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.96 | 89.0 | 6.96e-01 | 100.0% | 52.5% |
| 3249529 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.96 | 88.0 | 5.94e-01 | 100.0% | 31.1% |
| 3230775 | 192.1.1.25 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C | 0.96 | 89.0 | 6.30e-01 | 100.0% | 39.1% |
| 4958554 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.96 | 88.0 | 5.30e-01 | 100.0% | 17.9% |
| 4936633 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.96 | 88.0 | 5.42e-01 | 100.0% | 20.5% |
| 4419795 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.95 | 80.0 | 8.20e-01 | 90.5% | 95.0% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.95 | 87.0 | 6.74e-01 | 100.0% | 50.6% |
| 4095142 | 109.4.1.465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPO22 | 0.95 | 87.0 | 5.96e-01 | 100.0% | 32.8% |
| 3194337 | 109.4.1.1263 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_16 | 0.95 | 87.0 | 5.50e-01 | 100.0% | 23.3% |
| 4472442 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.95 | 76.0 | 7.77e-01 | 85.7% | 90.0% |
| 5013157 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.95 | 88.0 | 5.98e-01 | 100.0% | 33.1% |
| 4883518 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.95 | 81.0 | 6.75e-01 | 92.9% | 57.4% |
| 3665994 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.94 | 78.0 | 5.17e-01 | 90.5% | 26.0% |
| 140767 | 632.8.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › DUF6853 | 0.94 | 85.0 | 5.89e-01 | 100.0% | 34.7% |
| 3452959 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.93 | 78.0 | 7.62e-01 | 90.5% | 84.4% |
| 5015169 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.93 | 85.0 | 5.45e-01 | 100.0% | 24.7% |
| 3260749 | 109.4.1.2241 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, TPR_8, TPR_19 | 0.93 | 80.0 | 5.53e-01 | 95.2% | 30.8% |
| 5024994 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.93 | 85.0 | 5.94e-01 | 100.0% | 35.8% |
| 3915827 | 109.4.1.1320 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_10, TPR_12 | 0.92 | 79.0 | 4.53e-01 | 92.9% | 11.6% |
| 4988301 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.92 | 82.0 | 5.47e-01 | 100.0% | 28.7% |
| 3681213 | 109.4.1.1864 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_BSK1_C | 0.91 | 79.0 | 5.38e-01 | 95.2% | 29.6% |
| 4973347 | 515.1.1.4 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 | 0.91 | 81.0 | 5.28e-01 | 100.0% | 24.7% |
| 4949471 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.91 | 81.0 | 5.24e-01 | 100.0% | 24.0% |
| 3935017 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.90 | 79.0 | 6.29e-01 | 97.6% | 51.2% |
| 5053329 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.90 | 81.0 | 5.72e-01 | 100.0% | 35.0% |
| 5039485 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.89 | 79.0 | 4.98e-01 | 100.0% | 21.0% |
| 4960168 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.89 | 78.0 | 5.13e-01 | 100.0% | 25.5% |
| 3925076 | 601.2.1.13 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Srg | 0.88 | 77.0 | 5.96e-01 | 100.0% | 46.7% |
| 3507421 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.87 | 79.0 | 6.60e-01 | 100.0% | 60.0% |
| 4257658 | 7524.1.1.2 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh | 0.86 | 66.0 | 4.18e-01 | 85.7% | 17.9% |
| 4961158 | 5076.2.1.3 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 | 0.76 | 66.0 | 4.13e-01 | 100.0% | 19.1% |