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IMGVR_UViG_3300038321_000200-3300038321-Ga0134857_004027_4114_5643

Arc-Vir

IMGVR_UViG_3300038321_000200-3300038321-Ga0134857_004027_4114_5643

Quality

66.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-104
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.67 45.0 4.30e-01 100.0% 59.8%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 46.0 4.72e-01 73.5% 100.0%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 45.0 4.44e-01 73.5% 100.0%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.62 47.0 4.56e-01 79.4% 100.0%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 51.0 4.77e-01 91.2% 93.6%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 48.0 4.63e-01 100.0% 75.2%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 56.0 4.79e-01 100.0% 76.8%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 56.0 4.76e-01 100.0% 77.6%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 54.0 4.69e-01 97.1% 73.8%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.59 43.0 4.83e-01 90.2% 98.7%
3duzA02 2.40.50.710 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 24.0 3.20e-01 93.1% 68.5%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.63e-01 97.1% 76.3%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.53e-01 97.1% 76.2%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 54.0 4.29e-01 100.0% 63.5%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 54.0 4.43e-01 100.0% 69.1%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 54.0 4.56e-01 100.0% 76.2%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 53.0 4.66e-01 100.0% 79.2%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 54.0 4.55e-01 100.0% 77.6%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 53.0 5.05e-01 100.0% 92.4%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 41.0 4.05e-01 75.5% 99.1%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 52.0 4.31e-01 100.0% 67.6%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 51.0 4.46e-01 100.0% 77.6%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 51.0 4.29e-01 100.0% 76.2%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.56 27.0 3.02e-01 100.0% 53.7%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.54 46.0 4.72e-01 92.2% 100.0%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 47.0 4.69e-01 100.0% 95.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501754 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.88 82.0 8.15e-01 99.0% 100.0%
3974181 1.1.5.88 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.70 52.0 5.55e-01 100.0% 88.9%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 50.0 5.18e-01 100.0% 80.0%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 48.0 5.09e-01 75.5% 81.1%
5026244 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 49.0 5.19e-01 75.5% 83.3%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 48.0 4.98e-01 74.5% 76.8%
3688711 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 48.0 4.69e-01 73.5% 83.6%
3743285 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.67 47.0 3.57e-01 72.5% 89.1%
3970225 1.1.13.68 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 0.67 48.0 5.08e-01 92.2% 84.4%
3971942 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 47.0 3.80e-01 73.5% 88.2%
4886283 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 46.0 3.53e-01 72.5% 47.7%
4458331 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 48.0 3.62e-01 75.5% 47.2%
4382946 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 46.0 3.62e-01 73.5% 50.7%
4131458 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 48.0 3.61e-01 76.5% 76.6%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 50.0 5.13e-01 95.1% 84.0%
3732638 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 45.0 3.34e-01 71.6% 80.4%
2665335 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 48.0 4.21e-01 77.5% 69.6%
4313132 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 55.0 4.05e-01 91.2% 49.4%
3820214 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 45.0 3.57e-01 73.5% 86.5%
4665306 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 49.0 3.64e-01 80.4% 72.2%
4057741 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 45.0 3.50e-01 73.5% 44.9%
2755063 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 48.0 3.82e-01 80.4% 87.3%
4154078 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 46.0 3.60e-01 75.5% 52.6%
4588052 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 46.0 3.45e-01 75.5% 44.8%
4257535 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 47.0 4.57e-01 97.1% 70.4%
3325109 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 46.0 3.63e-01 78.4% 83.6%
3363680 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 46.0 4.51e-01 77.5% 100.0%
None 0.62 52.0 3.35e-01 92.2% 24.3%
3658804 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 46.0 4.41e-01 77.5% 92.2%
4316025 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 48.0 3.71e-01 82.4% 84.1%
4358643 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 45.0 3.51e-01 76.5% 51.8%
4245054 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 49.0 3.68e-01 84.3% 46.3%
4048581 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 48.0 3.60e-01 82.4% 75.1%
4648999 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.61 47.0 3.65e-01 81.4% 85.0%
4276781 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.60 50.0 3.89e-01 89.2% 52.3%
5081561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 44.0 4.85e-01 92.2% 98.8%
3622133 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.60 51.0 3.83e-01 92.2% 85.6%
4933308 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.59 55.0 4.70e-01 100.0% 74.2%
4983682 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.58 54.0 4.83e-01 100.0% 85.0%
3980899 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 48.0 4.72e-01 89.2% 97.3%
4170287 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 49.0 3.83e-01 91.2% 84.7%
4995815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 52.0 4.87e-01 98.0% 88.0%
5063379 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.58 50.0 4.21e-01 98.0% 97.8%
5012011 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 49.0 4.55e-01 100.0% 77.6%
4615227 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 47.0 3.59e-01 93.1% 76.7%
4586641 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 47.0 3.59e-01 93.1% 76.2%
3259730 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 48.0 4.70e-01 100.0% 88.2%
4610038 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 46.0 3.53e-01 93.1% 76.6%
3347068 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 46.0 3.63e-01 96.1% 89.5%
3962452 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 45.0 3.49e-01 98.0% 44.5%
D2 high residues 151-242
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 35.0 3.98e-01 75.0% 82.1%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.56 45.0 4.68e-01 100.0% 96.5%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.54 42.0 3.47e-01 85.9% 100.0%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.70e-01 76.1% 67.0%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 41.0 3.36e-01 83.7% 72.6%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.52 37.0 3.83e-01 73.9% 100.0%
3c0tA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 40.0 3.14e-01 83.7% 68.7%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 39.0 3.21e-01 83.7% 96.7%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 36.0 3.04e-01 76.1% 71.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488117 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 45.0 3.67e-01 77.2% 68.2%
5073672 4252.1.1.7 beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.60 45.0 3.61e-01 79.3% 87.0%
3832022 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 46.0 3.14e-01 83.7% 99.7%
3468940 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 42.0 2.81e-01 77.2% 100.0%
3894975 11.1.6.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.56 51.0 4.53e-01 100.0% 71.5%
3849839 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.56 41.0 3.99e-01 76.1% 100.0%
3287652 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.56 41.0 3.02e-01 78.3% 48.5%
3529047 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.56 42.0 3.12e-01 78.3% 77.3%
3223399 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.56 40.0 3.11e-01 76.1% 78.1%
3470234 11.1.6.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.55 49.0 4.25e-01 100.0% 71.0%
3830647 868.1.1.5 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.55 43.0 3.37e-01 83.7% 68.2%
3467163 868.1.1.5 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.55 43.0 3.29e-01 83.7% 63.8%
3432858 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.55 39.0 3.43e-01 76.1% 99.3%
3619513 868.1.1.5 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.54 42.0 3.27e-01 83.7% 63.9%
5025225 876.1.1.10 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 0.54 48.0 3.43e-01 100.0% 82.9%
4100425 11.1.4.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.54 41.0 3.67e-01 81.5% 69.2%
3373176 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.53 39.0 3.48e-01 78.3% 98.6%
3300916 5.1.4.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.53 39.0 2.80e-01 79.3% 99.3%
5050551 876.1.1.0 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.52 39.0 3.30e-01 79.3% 98.0%
4136961 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.51 36.0 3.01e-01 75.0% 93.7%
3383615 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 37.0 2.63e-01 77.2% 99.7%
3728853 3767.1.1.0 a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.51 46.0 3.82e-01 100.0% 61.9%
3249804 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.50 38.0 3.03e-01 81.5% 95.9%
D3 medium residues 109-131_452-509
PDB
D4 medium residues 132-150_245-343_428-451
PDB