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IMGVR_UViG_3300038358_000381-3300038358-Ga0427876_002744_3678_5642
Arc-VirIMGVR_UViG_3300038358_000381-3300038358-Ga0427876_002744_3678_5642
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-194_267-295
Domain cluster:
rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00145.24 best | DNA_methylase | 217.5 | 4.70e-64 | 86.8% | 54.6% |
D2
high
residues 302-449
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09561.17 best | RE_HpaII | 98.7 | 6.90e-28 | 98.7% | 41.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c26A00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.57 | 25.0 | 3.39e-01 | 70.3% | 83.3% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.55 | 29.0 | 3.89e-01 | 83.8% | 96.2% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.54 | 20.0 | 3.01e-01 | 85.8% | 81.5% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 26.0 | 3.55e-01 | 85.8% | 93.2% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 22.0 | 3.18e-01 | 87.8% | 87.5% |
| 1xfdA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.52 | 36.0 | 2.59e-01 | 70.9% | 97.0% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 21.0 | 3.11e-01 | 85.8% | 89.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4589583 | 2008.1.1.191 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII | 0.87 | 83.0 | 7.82e-01 | 100.0% | 85.0% |
| 4952887 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 26.0 | 4.01e-01 | 85.8% | 100.0% |
| 4946165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 24.0 | 3.77e-01 | 75.7% | 96.4% |
| 4933213 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.61 | 26.0 | 3.75e-01 | 73.0% | 85.7% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 24.0 | 3.62e-01 | 77.0% | 94.5% |
| 5050109 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.59 | 25.0 | 3.35e-01 | 73.0% | 70.6% |
| 4947995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 24.0 | 3.64e-01 | 86.5% | 100.0% |
| 5025079 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 23.0 | 3.49e-01 | 74.3% | 100.0% |
| 3647369 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.55 | 29.0 | 3.78e-01 | 73.0% | 92.5% |
| 3485655 | 5.1.4.528 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT80_2nd | 0.54 | 41.0 | 3.09e-01 | 79.7% | 98.9% |
| 3576438 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 27.0 | 3.35e-01 | 79.7% | 77.8% |
| 3409750 | 5.1.4.219 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N | 0.53 | 37.0 | 2.66e-01 | 73.0% | 94.3% |
| 3990517 | 5.1.4.502 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT80_2nd | 0.52 | 40.0 | 2.69e-01 | 79.1% | 66.1% |
| 3873021 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.51 | 36.0 | 2.57e-01 | 73.0% | 87.8% |
| 3711884 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.50 | 37.0 | 2.76e-01 | 76.4% | 90.8% |
D3
high
residues 455-653
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09561.17 best | RE_HpaII | 225.0 | 2.80e-66 | 100.0% | 57.3% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 32.0 | 4.08e-01 | 78.9% | 83.5% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 29.0 | 4.18e-01 | 97.5% | 100.0% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 28.0 | 3.81e-01 | 99.5% | 92.9% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 20.0 | 3.11e-01 | 86.4% | 83.5% |
| 3oyyB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 17.0 | 2.75e-01 | 98.5% | 87.9% |
D4
medium
residues 195-266
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qv2A02 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.76 | 69.0 | 5.75e-01 | 100.0% | 92.5% |
| 3ptaA01 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.75 | 56.0 | 4.48e-01 | 84.7% | 41.0% |
| 1g55A01 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.74 | 67.0 | 5.46e-01 | 100.0% | 91.7% |
| 3ubtA02 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.69 | 63.0 | 4.89e-01 | 100.0% | 90.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3452652 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.75 | 67.0 | 4.78e-01 | 100.0% | 50.0% |
| 4542856 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.74 | 67.0 | 4.13e-01 | 100.0% | 51.0% |
| 3520440 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.74 | 66.0 | 4.52e-01 | 100.0% | 38.0% |
| 4598672 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.73 | 66.0 | 4.21e-01 | 100.0% | 44.5% |
| 5029977 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.72 | 64.0 | 4.14e-01 | 100.0% | 32.3% |
| 4533950 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.71 | 65.0 | 4.06e-01 | 100.0% | 49.0% |
| 4441830 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.68 | 61.0 | 3.90e-01 | 100.0% | 38.8% |