←Back to structures
IMGVR_UViG_3300038363_000271-3300038363-Ga0427889_002900_6006_6173
Arc-VirIMGVR_UViG_3300038363_000271-3300038363-Ga0427889_002900_6006_6173
Identity
- Kingdom:
- archaea
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-52
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfgA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 52.0 | 5.39e-01 | 100.0% | 87.5% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 43.0 | 4.03e-01 | 73.1% | 51.5% |
| 4a2aA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.67 | 52.0 | 4.85e-01 | 84.6% | 96.9% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 57.0 | 4.43e-01 | 100.0% | 73.9% |
| 1v92A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 41.0 | 4.30e-01 | 73.1% | 71.7% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 4.70e-01 | 84.6% | 74.5% |
| 1dv0A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 40.0 | 4.19e-01 | 73.1% | 71.1% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.64 | 49.0 | 4.13e-01 | 86.5% | 96.8% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.64 | 50.0 | 4.61e-01 | 84.6% | 87.9% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.62 | 52.0 | 3.34e-01 | 98.1% | 43.1% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.60 | 42.0 | 3.82e-01 | 75.0% | 52.7% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 53.0 | 3.96e-01 | 100.0% | 60.9% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 49.0 | 2.97e-01 | 100.0% | 63.2% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 47.0 | 4.18e-01 | 92.3% | 88.6% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 45.0 | 4.72e-01 | 84.6% | 93.6% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 49.0 | 3.17e-01 | 98.1% | 40.4% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 45.0 | 4.37e-01 | 100.0% | 76.3% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.58 | 48.0 | 4.17e-01 | 98.1% | 82.8% |
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 42.0 | 4.08e-01 | 88.5% | 71.0% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.56 | 43.0 | 3.78e-01 | 88.5% | 83.7% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 44.0 | 3.65e-01 | 100.0% | 56.4% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 40.0 | 3.50e-01 | 84.6% | 58.0% |
| 5ekdA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.50 | 44.0 | 3.47e-01 | 100.0% | 84.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3240717 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.78 | 48.0 | 4.94e-01 | 73.1% | 66.0% |
| 3897595 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.77 | 48.0 | 4.40e-01 | 71.2% | 50.8% |
| 3741466 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 46.0 | 5.10e-01 | 73.1% | 82.5% |
| 2886100 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 63.0 | 4.19e-01 | 98.1% | 52.1% |
| 4953552 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 43.0 | 4.77e-01 | 73.1% | 82.5% |
| 1843727 | 103.18.1.0 ↗ | alpha arrays › RuvA-C | 0.67 | 45.0 | 4.52e-01 | 73.1% | 69.2% |
| 3219554 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.67 | 48.0 | 4.93e-01 | 80.8% | 82.0% |
| 5023830 | 2484.1.1.70 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA | 0.66 | 57.0 | 3.93e-01 | 100.0% | 50.0% |
| 3473478 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.61 | 46.0 | 4.66e-01 | 100.0% | 84.0% |
| 2581372 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.59 | 45.0 | 4.19e-01 | 100.0% | 67.2% |
| 3391086 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 45.0 | 2.63e-01 | 90.4% | 9.1% |
| 4268931 | 3858.1.1.1 ↗ | few secondary structure elements › Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › FeS | 0.58 | 49.0 | 4.62e-01 | 100.0% | 81.5% |
| 3222360 | 103.1.1.21 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID | 0.58 | 43.0 | 4.47e-01 | 88.5% | 97.8% |
| 4951196 | 3290.1.1.1 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto | 0.58 | 46.0 | 4.12e-01 | 100.0% | 61.3% |
| 3587532 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.57 | 43.0 | 4.30e-01 | 84.6% | 98.2% |
| 3937269 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.56 | 42.0 | 2.97e-01 | 86.5% | 25.4% |
| 3295940 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 43.0 | 4.23e-01 | 84.6% | 96.4% |
| 3173985 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 35.0 | 3.69e-01 | 71.2% | 75.6% |
| 3475320 | 101.1.1.123 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N | 0.54 | 40.0 | 3.75e-01 | 84.6% | 81.4% |
| 3588628 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 43.0 | 4.24e-01 | 92.3% | 94.8% |
| 4970811 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.53 | 40.0 | 3.68e-01 | 100.0% | 60.0% |
| 3402082 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 39.0 | 3.28e-01 | 82.7% | 47.0% |
| 3786777 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.53 | 39.0 | 3.60e-01 | 100.0% | 61.4% |