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IMGVR_UViG_3300038365_000136-3300038365-Ga0134850_000682_31437_31697

Arc-Vir

IMGVR_UViG_3300038365_000136-3300038365-Ga0134850_000682_31437_31697

Identity

Kingdom:
archaea

Quality

73.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.77 48.0 4.91e-01 80.6% 66.1%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.75 48.0 3.99e-01 82.3% 38.5%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.74 49.0 4.05e-01 80.6% 39.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.71 48.0 3.83e-01 83.9% 34.9%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.70 47.0 3.65e-01 82.3% 32.1%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.70 49.0 3.95e-01 85.5% 38.8%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 52.0 4.12e-01 85.5% 40.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 3.73e-01 83.9% 50.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 43.0 4.07e-01 80.6% 60.0%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 46.0 3.60e-01 83.9% 38.3%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 36.0 3.63e-01 80.6% 59.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.58 40.0 3.28e-01 83.9% 37.1%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 4.26e-01 98.4% 77.1%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.85e-01 100.0% 52.6%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.70e-01 83.9% 76.0%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.53 37.0 3.71e-01 83.9% 73.0%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.97e-01 82.3% 81.2%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.53 46.0 3.18e-01 98.4% 32.5%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 39.0 2.81e-01 83.9% 92.2%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.76e-01 88.7% 73.5%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.72e-01 100.0% 57.1%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.52 39.0 3.32e-01 85.5% 46.6%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 41.0 3.14e-01 91.9% 89.8%
2fivA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 45.0 3.71e-01 96.8% 68.1%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 3.21e-01 95.2% 60.8%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 41.0 3.44e-01 93.5% 76.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961179 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.77 44.0 4.81e-01 74.2% 70.0%
3257603 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.75 51.0 4.11e-01 82.3% 36.7%
3993370 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.72 55.0 3.54e-01 85.5% 17.6%
3744517 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.72 50.0 4.00e-01 83.9% 37.5%
3554073 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.71 49.0 3.86e-01 85.5% 34.6%
3747453 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.70 47.0 3.58e-01 82.3% 30.7%
4931302 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.70 44.0 4.79e-01 80.6% 80.0%
3509864 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.69 52.0 4.12e-01 83.9% 40.0%
4946190 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 54.0 4.56e-01 98.4% 52.4%
3441822 5008.1.1.0 ↗ extended segments › Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) › Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) › Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 0.67 39.0 4.68e-01 75.8% 100.0%
3531702 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 52.0 3.97e-01 87.1% 44.3%
3618787 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 47.0 3.97e-01 83.9% 44.5%
3871082 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 54.0 4.05e-01 98.4% 38.0%
3713700 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 49.0 3.55e-01 82.3% 44.1%
3903091 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.63 46.0 2.81e-01 82.3% 12.3%
3630103 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 48.0 3.82e-01 88.7% 40.0%
3841771 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 46.0 3.45e-01 82.3% 32.0%
5005890 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 47.0 3.38e-01 98.4% 28.6%
3564807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 46.0 3.41e-01 82.3% 31.0%
3212093 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.62 55.0 4.55e-01 98.4% 76.4%
3518995 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 49.0 3.57e-01 88.7% 42.9%
4948708 207.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C 0.61 52.0 3.66e-01 100.0% 31.2%
4946188 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 45.0 4.22e-01 80.6% 71.2%
1930750 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 44.0 3.31e-01 82.3% 31.0%
3271559 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 47.0 3.69e-01 85.5% 45.2%
3626463 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 3.20e-01 88.7% 29.4%
3513396 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 47.0 3.33e-01 83.9% 40.0%
3225458 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 53.0 3.97e-01 100.0% 43.9%
5037301 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.57 47.0 4.19e-01 100.0% 63.8%
4444672 11.1.5.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 0.56 42.0 3.24e-01 83.9% 76.9%
4024970 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 41.0 2.50e-01 80.6% 13.0%
3996695 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.55 39.0 4.07e-01 95.2% 87.3%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.55 41.0 3.94e-01 83.9% 69.3%
3652009 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.78e-01 100.0% 57.7%
5030410 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 43.0 3.92e-01 100.0% 64.2%
5035745 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.53 43.0 3.74e-01 100.0% 57.1%
5072612 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.53 43.0 3.29e-01 95.2% 54.6%
5069581 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.76e-01 100.0% 56.4%
3894481 277.1.1.5 ↗ a+b two layers › PX domain › PX domain › PX domain › Vps5 0.52 40.0 2.53e-01 85.5% 19.2%
3965187 814.1.1.2 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.52 45.0 3.45e-01 100.0% 52.0%
2157301 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.52 38.0 3.73e-01 98.4% 71.2%
2 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.52 45.0 3.69e-01 96.8% 68.1%
4514613 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 40.0 3.00e-01 90.3% 82.8%
4283257 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.51 42.0 2.70e-01 91.9% 88.8%
4001482 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.51 34.0 3.29e-01 71.0% 84.0%
4126991 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 42.0 3.74e-01 98.4% 64.4%