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IMGVR_UViG_3300038365_000136-3300038365-Ga0134850_000682_9355_10722

Arc-Vir

IMGVR_UViG_3300038365_000136-3300038365-Ga0134850_000682_9355_10722

Quality

68.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-140
PDB
D2 high residues 396-448
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 68.0 7.06e-01 96.2% 98.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.95e-01 92.5% 98.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 69.0 6.17e-01 100.0% 69.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 6.14e-01 100.0% 72.5%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 6.82e-01 100.0% 98.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 70.0 6.85e-01 98.1% 94.7%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.77 67.0 4.48e-01 100.0% 31.5%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.77 69.0 5.41e-01 100.0% 56.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 5.82e-01 100.0% 77.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 69.0 6.78e-01 100.0% 94.6%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 66.0 6.56e-01 98.1% 100.0%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 67.0 5.82e-01 100.0% 88.9%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 6.21e-01 98.1% 94.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 68.0 5.52e-01 100.0% 84.4%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 5.17e-01 92.5% 53.3%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.84e-01 90.6% 90.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.75 65.0 6.07e-01 100.0% 91.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 6.35e-01 100.0% 88.1%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 66.0 4.53e-01 100.0% 42.7%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 65.0 4.34e-01 100.0% 36.9%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 4.89e-01 100.0% 48.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 59.0 6.20e-01 96.2% 97.9%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 58.0 4.79e-01 100.0% 49.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 55.0 5.80e-01 83.0% 93.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 5.59e-01 100.0% 84.3%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 6.02e-01 86.8% 97.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 58.0 5.84e-01 90.6% 87.0%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.71 55.0 5.70e-01 84.9% 91.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 59.0 5.28e-01 100.0% 66.2%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 57.0 4.74e-01 100.0% 51.1%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.70 58.0 4.13e-01 90.6% 80.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.86e-01 98.1% 98.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 59.0 5.43e-01 100.0% 85.7%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.68 61.0 5.47e-01 100.0% 76.7%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 58.0 4.09e-01 100.0% 46.2%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.35e-01 100.0% 95.2%
2prvA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.66 54.0 3.91e-01 90.6% 39.9%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 45.0 4.05e-01 71.7% 91.8%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 53.0 3.82e-01 100.0% 98.9%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 52.0 4.26e-01 96.2% 98.1%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 51.0 3.47e-01 90.6% 37.1%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 51.0 4.42e-01 90.6% 89.4%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 44.0 3.60e-01 84.9% 72.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 44.0 2.93e-01 84.9% 48.6%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 49.0 2.93e-01 100.0% 32.4%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 39.0 2.85e-01 90.6% 24.5%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 38.0 2.79e-01 73.6% 75.3%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 43.0 3.34e-01 90.6% 61.9%
4p4mA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 45.0 3.53e-01 92.5% 41.7%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.35e-01 100.0% 78.9%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 40.0 3.50e-01 84.9% 77.4%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.36e-01 94.3% 78.8%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.74e-01 92.5% 29.4%
2ftxA00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.52 37.0 3.21e-01 79.2% 49.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.51 37.0 2.97e-01 79.2% 87.6%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3862126 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.89 73.0 6.95e-01 100.0% 76.7%
4579331 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 79.0 7.35e-01 100.0% 79.4%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.88 77.0 7.61e-01 100.0% 90.9%
4950396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 71.0 7.02e-01 100.0% 85.5%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.85 77.0 6.51e-01 100.0% 82.4%
3656232 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.84 67.0 7.21e-01 98.1% 100.0%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.84 77.0 5.12e-01 100.0% 36.3%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.84 77.0 6.22e-01 100.0% 83.2%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.84 74.0 6.36e-01 96.2% 95.0%
5058671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 71.0 7.03e-01 100.0% 89.1%
4325815 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 72.0 3.99e-01 100.0% 8.0%
4611708 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.83 68.0 6.50e-01 100.0% 78.3%
3964846 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.82 68.0 5.76e-01 98.1% 56.5%
3588979 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.82 74.0 7.17e-01 100.0% 88.1%
3950193 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.82 74.0 7.48e-01 100.0% 98.1%
4116921 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.82 66.0 6.36e-01 100.0% 78.3%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.81 66.0 6.16e-01 100.0% 72.3%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 70.0 6.91e-01 100.0% 90.9%
3278801 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.81 65.0 6.11e-01 100.0% 72.3%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 68.0 6.81e-01 100.0% 90.9%
3761440 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 66.0 6.54e-01 100.0% 85.5%
4278184 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.80 72.0 6.21e-01 100.0% 78.8%
3457106 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.80 72.0 6.73e-01 100.0% 92.3%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.93e-01 100.0% 92.7%
5074039 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.40e-01 100.0% 84.0%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.80 72.0 6.08e-01 100.0% 90.6%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 71.0 7.07e-01 100.0% 94.5%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.80 72.0 5.27e-01 100.0% 44.4%
3363448 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.80 71.0 6.04e-01 100.0% 92.9%
3601070 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 71.0 6.59e-01 98.1% 100.0%
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.79 69.0 5.96e-01 96.2% 68.8%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 71.0 6.48e-01 100.0% 94.3%
3668420 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.79 70.0 4.75e-01 100.0% 58.9%
3308545 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.79 65.0 4.51e-01 88.7% 34.4%
3669214 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.79 70.0 5.24e-01 100.0% 86.2%
4024915 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 71.0 6.64e-01 100.0% 90.8%
3368864 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.79 71.0 6.62e-01 100.0% 92.3%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 71.0 6.62e-01 100.0% 98.5%
4032729 4.1.1.168 beta barrels › SH3 › SH3 › SH3 › DUF2187 0.79 71.0 6.90e-01 100.0% 94.8%
3597513 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 67.0 6.68e-01 92.5% 90.9%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.72e-01 96.2% 90.9%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 71.0 6.61e-01 100.0% 84.6%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.78 70.0 6.08e-01 100.0% 97.5%
5013892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 69.0 6.88e-01 100.0% 94.5%
3425872 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.78 68.0 5.69e-01 98.1% 86.7%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.36e-01 90.6% 90.9%
4998148 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.33e-01 100.0% 87.3%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 70.0 6.34e-01 100.0% 81.4%
4536562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.12e-01 100.0% 70.7%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 5.82e-01 100.0% 83.5%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.85e-01 100.0% 75.0%
4980648 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.12e-01 100.0% 74.3%
4015238 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.77 68.0 5.12e-01 100.0% 44.0%
4967397 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 67.0 6.29e-01 100.0% 80.0%
5060760 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 65.0 6.14e-01 100.0% 78.5%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 69.0 6.63e-01 100.0% 88.3%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.76 69.0 4.18e-01 100.0% 91.9%
3930014 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 65.0 4.57e-01 94.3% 61.9%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 67.0 5.71e-01 98.1% 90.6%
3634374 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 60.0 6.23e-01 100.0% 90.0%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 4.46e-01 100.0% 27.0%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 65.0 5.93e-01 100.0% 72.9%
4026678 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 65.0 5.93e-01 100.0% 72.9%
5066141 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 63.0 5.93e-01 100.0% 76.9%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 68.0 6.50e-01 100.0% 98.3%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 64.0 5.56e-01 94.3% 68.8%
3199895 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 60.0 4.89e-01 100.0% 48.4%
4995678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.30e-01 94.3% 92.7%
4281020 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 60.0 4.86e-01 100.0% 48.4%
3292420 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 60.0 4.95e-01 100.0% 51.1%
4316004 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 60.0 5.05e-01 100.0% 54.1%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 4.29e-01 100.0% 24.4%
4526316 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 4.80e-01 100.0% 48.4%
4184958 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 59.0 4.97e-01 100.0% 54.1%
4047241 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 4.79e-01 100.0% 48.4%
4204303 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 59.0 4.90e-01 100.0% 51.1%
5039793 219.1.1.77 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.73 63.0 4.24e-01 100.0% 38.0%
4975150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.09e-01 100.0% 86.7%
4854958 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 4.78e-01 100.0% 47.9%
4163711 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 4.97e-01 100.0% 54.1%
3625264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.08e-01 94.3% 54.7%
4512995 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 5.27e-01 100.0% 65.7%
2814716 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 4.73e-01 100.0% 48.4%
3973553 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 58.0 5.25e-01 100.0% 65.7%
4128405 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 5.25e-01 100.0% 65.7%
4038642 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 5.28e-01 100.0% 65.7%
4087314 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 59.0 5.05e-01 100.0% 58.7%
4111597 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 57.0 5.30e-01 100.0% 70.8%
3981575 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.72e-01 92.5% 87.3%
4273414 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 56.0 5.10e-01 100.0% 67.1%
3649175 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 56.0 3.34e-01 100.0% 12.9%
3947337 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.66 57.0 4.13e-01 100.0% 34.8%
3993710 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 44.0 3.97e-01 81.1% 96.2%
4944430 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.54 44.0 3.88e-01 92.5% 92.5%
D3 medium residues 160-221
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.77 58.0 5.07e-01 80.6% 87.9%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 55.0 4.45e-01 80.6% 97.4%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.72 55.0 4.31e-01 83.9% 66.4%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 51.0 4.60e-01 80.6% 97.6%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 52.0 4.76e-01 83.9% 92.7%
6khuA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.68 59.0 4.65e-01 98.4% 76.2%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.67e-01 88.7% 92.9%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 51.0 4.20e-01 82.3% 98.2%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 51.0 4.26e-01 88.7% 68.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.62 45.0 4.86e-01 80.6% 98.0%
3bf4A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.75e-01 79.0% 100.0%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.59 44.0 4.02e-01 82.3% 95.3%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 39.0 3.01e-01 71.0% 59.6%
2r7rA07 3.30.230.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 44.0 3.57e-01 83.9% 80.8%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.42e-01 82.3% 71.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 48.0 4.25e-01 98.4% 92.6%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 47.0 4.35e-01 96.8% 100.0%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 41.0 3.95e-01 98.4% 69.4%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 47.0 3.74e-01 100.0% 67.4%
4gxzD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 40.0 3.03e-01 80.6% 76.5%
4xfjA02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.53 38.0 2.74e-01 77.4% 44.9%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 43.0 3.70e-01 100.0% 78.5%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4595959 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.77 58.0 5.33e-01 80.6% 100.0%
3512817 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.74 56.0 4.41e-01 80.6% 74.4%
4959792 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.72 64.0 4.69e-01 95.2% 96.7%
3588004 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.66 58.0 4.47e-01 98.4% 77.9%
4229813 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.65 54.0 3.57e-01 95.2% 36.5%
4012046 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.65 53.0 3.53e-01 93.5% 36.7%
4613363 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.65 53.0 3.51e-01 93.5% 38.1%
4491515 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.65 54.0 3.58e-01 95.2% 38.1%
3839805 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.64 47.0 4.03e-01 80.6% 96.2%
4532152 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.63 51.0 3.38e-01 93.5% 36.1%
4012947 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.62 53.0 3.48e-01 98.4% 38.5%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.62 46.0 2.89e-01 88.7% 14.1%
4016417 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.62 50.0 3.34e-01 93.5% 38.9%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.61 51.0 4.37e-01 100.0% 86.1%
3682007 304.8.1.64 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P 0.60 51.0 3.64e-01 100.0% 63.8%
4219489 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.59 48.0 3.20e-01 93.5% 37.1%
3613416 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.58 50.0 4.11e-01 100.0% 91.7%
4977431 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 43.0 4.32e-01 87.1% 90.8%
4950433 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.97e-01 100.0% 77.0%
3976202 304.139.1.4 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 0.54 46.0 2.93e-01 100.0% 20.3%
3214302 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.29e-01 82.3% 59.1%
4943464 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 42.0 3.76e-01 93.5% 100.0%
3407363 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 44.0 3.42e-01 100.0% 71.0%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.30e-01 100.0% 59.4%
4980071 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.54e-01 100.0% 64.0%
4024071 10.32.1.17 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.50 37.0 2.75e-01 82.3% 37.9%
D4 medium residues 225-276
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1scjB00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.78 69.0 6.27e-01 100.0% 88.7%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 66.0 5.87e-01 100.0% 77.6%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 66.0 5.92e-01 100.0% 97.3%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 67.0 5.75e-01 100.0% 79.3%
8hi1E01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 64.0 5.45e-01 98.1% 66.7%
2z30B00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.74 64.0 6.02e-01 100.0% 87.7%
2cg4A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.74 63.0 5.50e-01 100.0% 82.1%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 64.0 5.53e-01 100.0% 78.8%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 64.0 5.25e-01 100.0% 78.6%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 63.0 5.86e-01 100.0% 92.6%
3rrkA01 3.30.70.2170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 63.0 5.73e-01 100.0% 97.2%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 63.0 5.44e-01 100.0% 76.5%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.73 63.0 4.40e-01 100.0% 39.8%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.72 62.0 4.81e-01 100.0% 81.5%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.72 60.0 5.43e-01 100.0% 90.9%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 60.0 5.31e-01 100.0% 89.0%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 60.0 5.18e-01 100.0% 83.1%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.71 60.0 5.66e-01 100.0% 82.1%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 58.0 5.31e-01 98.1% 97.3%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.70 58.0 5.24e-01 100.0% 90.8%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 56.0 5.29e-01 100.0% 100.0%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.68 54.0 5.34e-01 92.3% 98.2%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.67 51.0 5.33e-01 100.0% 97.8%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 55.0 4.70e-01 100.0% 75.6%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 53.0 4.82e-01 100.0% 88.6%
1r6vA02 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.65 52.0 4.79e-01 100.0% 80.8%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 53.0 4.51e-01 100.0% 87.4%
3tmaA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.64 52.0 3.91e-01 100.0% 38.1%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.64 50.0 4.51e-01 88.5% 87.8%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 53.0 4.39e-01 100.0% 84.2%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.63 51.0 4.84e-01 100.0% 88.1%
1fxrA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.81e-01 100.0% 96.9%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.38e-01 100.0% 92.7%
4w8iA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 48.0 3.77e-01 90.4% 49.6%
2k2pA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.66e-01 98.1% 98.4%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 49.0 4.78e-01 100.0% 93.5%
3axsA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.59 44.0 4.26e-01 88.5% 87.7%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 44.0 3.64e-01 90.4% 54.9%
4tshB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.37e-01 100.0% 45.7%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 43.0 3.59e-01 86.5% 64.0%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.55e-01 80.8% 69.7%
3pvtA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 40.0 2.57e-01 86.5% 43.1%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 40.0 3.21e-01 84.6% 80.0%
5ujeA01 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.52 38.0 3.23e-01 88.5% 78.4%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.52 39.0 3.39e-01 90.4% 85.1%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.78e-01 75.0% 42.3%
4i62A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 43.0 3.65e-01 100.0% 94.6%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 2.85e-01 73.1% 73.6%
4my0A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.14e-01 100.0% 95.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057426 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.83 74.0 7.06e-01 100.0% 85.0%
4981990 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.82 71.0 7.01e-01 96.2% 94.5%
5002190 304.7.1.21 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30773 0.80 71.0 6.41e-01 100.0% 82.9%
5069078 304.7.1.21 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30773 0.79 69.0 5.76e-01 100.0% 64.4%
4170754 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.79 69.0 6.61e-01 100.0% 88.3%
5006278 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.78 67.0 6.65e-01 96.2% 94.5%
4388056 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.78 69.0 5.48e-01 100.0% 71.4%
5041633 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.78 68.0 6.18e-01 100.0% 88.6%
3458493 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.77 69.0 5.85e-01 100.0% 80.0%
5049019 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.76 65.0 5.27e-01 100.0% 73.8%
4073616 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.76 64.0 6.02e-01 100.0% 92.3%
4034485 304.120.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.75 66.0 6.00e-01 100.0% 81.4%
5035636 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.75 65.0 5.27e-01 100.0% 76.0%
4457666 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.75 63.0 5.61e-01 100.0% 71.2%
4939498 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.74 64.0 5.99e-01 100.0% 95.4%
5013656 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 63.0 6.11e-01 100.0% 100.0%
5080633 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.74 61.0 5.71e-01 94.2% 100.0%
2098117 304.56.1.1 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 0.74 64.0 5.30e-01 100.0% 62.1%
5060568 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.74 63.0 6.06e-01 100.0% 98.3%
5007807 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.73 63.0 5.22e-01 100.0% 80.0%
4565839 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.73 61.0 5.96e-01 100.0% 95.0%
4927584 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.72 61.0 6.07e-01 100.0% 98.2%
3909937 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.72 49.0 4.18e-01 100.0% 44.0%
4986463 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.72 57.0 3.64e-01 100.0% 17.1%
5035614 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 60.0 5.84e-01 100.0% 100.0%
4990094 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.72 61.0 5.60e-01 98.1% 100.0%
3878052 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.72 49.0 4.21e-01 100.0% 44.7%
3589438 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.71 59.0 5.73e-01 100.0% 98.3%
4941492 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.70 59.0 5.70e-01 100.0% 98.3%
3891071 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.70 50.0 4.45e-01 100.0% 54.1%
5026454 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.69 58.0 5.50e-01 100.0% 83.1%
3228564 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.67 55.0 4.51e-01 100.0% 67.3%
4075892 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.67 56.0 4.40e-01 100.0% 97.5%
5038208 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 52.0 5.17e-01 100.0% 80.0%
3701635 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.66 56.0 4.69e-01 100.0% 68.4%
3285997 1.1.7.27 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.66 49.0 4.07e-01 80.8% 79.8%
3424732 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 55.0 4.89e-01 100.0% 92.5%
3957901 304.121.1.1 a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 0.65 54.0 4.68e-01 100.0% 82.2%
4185829 3253.1.1.0 a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA 0.65 53.0 5.44e-01 96.2% 98.0%
3909023 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 51.0 4.49e-01 100.0% 90.0%
3883258 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.63 49.0 4.36e-01 100.0% 59.5%
4975038 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.63 51.0 4.87e-01 100.0% 93.8%
3700856 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 49.0 4.16e-01 94.2% 78.0%
3989567 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.62 50.0 4.86e-01 100.0% 95.0%
5039575 2484.1.1.340 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.61 47.0 3.54e-01 100.0% 30.6%
5047964 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.61 45.0 3.74e-01 84.6% 44.8%
3250389 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.61 51.0 4.45e-01 100.0% 71.8%
3251666 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.60 49.0 4.84e-01 100.0% 93.2%
3275725 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 49.0 4.38e-01 100.0% 72.5%
3668147 387.1.5.1 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Gamma-thionin 0.55 38.0 3.72e-01 76.9% 95.0%
4956336 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 38.0 3.18e-01 76.9% 63.0%
3706691 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 41.0 4.02e-01 88.5% 95.0%
5077630 2484.1.1.340 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.54 43.0 3.20e-01 100.0% 31.5%
3496992 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.53 42.0 3.31e-01 98.1% 52.3%
4230066 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.53 36.0 3.09e-01 73.1% 61.1%
5049563 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.52 38.0 2.19e-01 80.8% 8.5%
4966124 101.1.2.924 alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.50 36.0 2.62e-01 73.1% 32.3%
5000330 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.50 35.0 3.19e-01 78.8% 77.5%
D5 medium residues 313-395
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12083.14 best DUF3560 64.8 1.20e-17 98.8% 50.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 56.0 4.93e-01 75.9% 62.4%
2ihr101 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.71 48.0 4.48e-01 86.7% 55.7%
2dfkC01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.67 49.0 3.59e-01 75.9% 51.9%
3fcnA00 1.20.1220.20 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 0.66 55.0 4.39e-01 89.2% 74.7%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 57.0 4.12e-01 97.6% 51.7%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 4.04e-01 79.5% 53.3%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.56 46.0 4.53e-01 98.8% 100.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3648687 604.12.1.89 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf 0.83 51.0 4.91e-01 71.1% 54.7%
5012473 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 52.0 4.77e-01 80.7% 72.7%
3897625 3755.4.1.71 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › WWC1 0.66 52.0 4.44e-01 84.3% 54.1%
3098420 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.64 49.0 4.43e-01 79.5% 62.4%
4594578 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.64 46.0 4.41e-01 86.7% 66.3%
3689037 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.83e-01 77.1% 94.2%