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IMGVR_UViG_3300038365_000206-3300038365-Ga0134850_000025_80023_80508

Arc-Vir

IMGVR_UViG_3300038365_000206-3300038365-Ga0134850_000025_80023_80508

Identity

Kingdom:
archaea

Quality

81.3 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-103
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.86 69.0 6.38e-01 100.0% 68.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.79 66.0 6.34e-01 100.0% 78.8%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.78 62.0 5.62e-01 100.0% 64.1%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 70.0 6.20e-01 100.0% 88.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 65.0 6.09e-01 100.0% 76.1%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 66.0 5.56e-01 100.0% 59.2%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 69.0 5.57e-01 100.0% 65.0%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 68.0 6.17e-01 100.0% 81.9%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 62.0 5.53e-01 100.0% 65.0%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 66.0 5.72e-01 100.0% 66.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.73 65.0 6.13e-01 100.0% 81.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 63.0 5.71e-01 100.0% 71.6%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.72 66.0 5.54e-01 100.0% 67.3%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 62.0 5.85e-01 100.0% 80.0%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 65.0 5.50e-01 100.0% 63.8%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 57.0 4.82e-01 100.0% 53.0%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 64.0 5.68e-01 100.0% 71.8%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.68 63.0 5.47e-01 100.0% 82.6%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 62.0 5.49e-01 100.0% 74.4%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 62.0 5.78e-01 100.0% 82.1%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 61.0 5.39e-01 100.0% 70.9%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.66 60.0 5.52e-01 100.0% 81.4%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.66 60.0 5.19e-01 100.0% 80.1%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 58.0 5.56e-01 100.0% 86.4%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.20e-01 100.0% 78.4%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.69e-01 100.0% 60.4%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.62 55.0 5.40e-01 97.8% 94.7%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.93e-01 100.0% 89.4%
3tghA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 44.0 2.99e-01 75.3% 96.5%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.60e-01 100.0% 64.5%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 40.0 3.79e-01 75.3% 85.3%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 39.0 3.22e-01 100.0% 39.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 4.04e-01 98.9% 96.3%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 43.0 2.85e-01 82.0% 34.1%
3qdkB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 2.91e-01 76.4% 96.0%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.55 37.0 3.19e-01 74.2% 44.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 40.0 4.52e-01 98.9% 100.0%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.55 39.0 4.27e-01 98.9% 90.5%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.54 46.0 4.48e-01 96.6% 84.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 4.22e-01 98.9% 98.4%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 4.06e-01 98.9% 94.0%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.76e-01 96.6% 96.3%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.68e-01 79.8% 87.8%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 45.0 3.96e-01 97.8% 100.0%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.51 42.0 3.78e-01 93.3% 99.2%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 39.0 2.79e-01 84.3% 60.7%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 35.0 3.54e-01 73.0% 100.0%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.84 70.0 6.46e-01 100.0% 70.9%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.83 71.0 6.55e-01 100.0% 72.7%
3259098 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.83 69.0 6.16e-01 100.0% 65.0%
3253075 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.82 70.0 6.25e-01 100.0% 66.7%
4943079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.82 70.0 5.70e-01 100.0% 52.3%
5013238 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 76.0 6.76e-01 100.0% 84.2%
3774282 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 70.0 5.80e-01 100.0% 55.3%
3849761 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.80 68.0 4.51e-01 100.0% 24.9%
3705153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 74.0 6.35e-01 100.0% 72.6%
4488977 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.79 69.0 5.81e-01 100.0% 58.6%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.79 67.0 6.33e-01 100.0% 77.1%
3625776 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.78 72.0 6.62e-01 100.0% 79.1%
4949940 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 63.0 6.35e-01 100.0% 84.3%
3589974 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 74.0 6.11e-01 100.0% 75.2%
3907293 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.78 66.0 6.26e-01 100.0% 77.1%
3191108 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.78 72.0 5.46e-01 100.0% 66.2%
3785491 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.78 64.0 5.61e-01 100.0% 60.8%
3704470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 72.0 6.07e-01 100.0% 79.3%
3927128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 70.0 6.28e-01 100.0% 72.5%
4020583 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 71.0 6.20e-01 100.0% 70.0%
3715264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 72.0 6.41e-01 100.0% 83.3%
3923512 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.77 64.0 5.79e-01 100.0% 66.7%
3394537 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 71.0 6.60e-01 100.0% 85.5%
3996551 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 65.0 6.53e-01 100.0% 88.9%
3748070 220.1.1.130 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_21 0.76 71.0 6.32e-01 100.0% 76.7%
3598219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 71.0 6.23e-01 100.0% 80.8%
3407322 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.76 66.0 6.36e-01 100.0% 82.0%
5037274 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 70.0 6.50e-01 100.0% 82.7%
3244890 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 64.0 5.78e-01 100.0% 67.5%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 63.0 6.01e-01 100.0% 77.1%
3856004 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 66.0 5.95e-01 100.0% 71.3%
3933227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 66.0 6.00e-01 100.0% 73.0%
3249874 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.75 69.0 5.61e-01 100.0% 60.6%
4964696 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.75 68.0 6.23e-01 98.9% 80.9%
3803797 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.75 70.0 6.24e-01 100.0% 75.0%
3407058 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.75 69.0 5.39e-01 100.0% 65.0%
4927397 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 69.0 5.53e-01 100.0% 64.2%
3555736 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 61.0 5.12e-01 100.0% 52.7%
3208744 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.74 69.0 6.25e-01 100.0% 79.1%
3575385 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 64.0 6.16e-01 100.0% 82.0%
3998850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 65.0 5.99e-01 100.0% 75.5%
3701622 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 68.0 5.66e-01 100.0% 68.0%
3568302 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.74 68.0 5.32e-01 100.0% 57.2%
4191831 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.74 69.0 4.77e-01 100.0% 71.7%
3629974 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.74 64.0 6.11e-01 100.0% 82.0%
3633728 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 65.0 5.92e-01 100.0% 73.9%
3271575 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 68.0 5.55e-01 100.0% 69.7%
4112170 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 64.0 5.42e-01 100.0% 59.3%
3885860 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.73 68.0 5.23e-01 100.0% 62.7%
3339984 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 63.0 5.65e-01 100.0% 68.3%
3906610 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.73 63.0 5.36e-01 100.0% 59.3%
3923613 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.72 67.0 5.36e-01 100.0% 83.0%
3493653 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.72 67.0 5.14e-01 100.0% 72.1%
3221529 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 67.0 5.69e-01 100.0% 65.0%
3900920 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 67.0 5.88e-01 100.0% 72.8%
3935039 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 66.0 5.57e-01 100.0% 75.0%
3869434 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 63.0 5.53e-01 100.0% 66.9%
3570598 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 65.0 5.54e-01 100.0% 66.4%
3571085 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 65.0 5.72e-01 100.0% 75.2%
3237492 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 64.0 4.16e-01 100.0% 24.5%
3628479 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 63.0 4.53e-01 100.0% 37.6%
161941 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 62.0 5.49e-01 100.0% 74.4%
3482374 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 4.31e-01 100.0% 32.7%
3414887 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.67 61.0 4.27e-01 100.0% 33.8%
3414950 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 60.0 5.51e-01 100.0% 76.5%
4444916 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 60.0 3.90e-01 100.0% 22.6%
4986209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 61.0 5.39e-01 100.0% 71.0%
4031110 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 5.16e-01 100.0% 68.8%
3796176 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.66 59.0 4.98e-01 100.0% 65.3%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.66 59.0 5.53e-01 100.0% 82.7%
3721965 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.65 56.0 5.13e-01 100.0% 73.0%
3264986 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.64 58.0 5.39e-01 100.0% 83.6%
4144852 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.62 54.0 5.09e-01 100.0% 79.6%
4033429 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 37.0 3.90e-01 98.9% 67.5%
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.50e-01 98.9% 92.3%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.59 49.0 4.46e-01 94.4% 100.0%
3744656 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 42.0 2.70e-01 77.5% 37.1%
5019886 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.56 35.0 3.81e-01 98.9% 74.7%
5029147 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 4.06e-01 73.0% 86.3%
4428983 5.1.4.321 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.52 44.0 2.78e-01 93.3% 22.3%
3593656 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 46.0 2.91e-01 100.0% 100.0%
3639370 5.1.4.543 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_DCAF12, Beta-prop_WDR5 0.51 41.0 2.73e-01 92.1% 22.3%
4016706 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.51 44.0 2.91e-01 95.5% 88.8%
3877211 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 45.0 2.86e-01 100.0% 29.0%
D2 high residues 113-159
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09851.15 best SHOCT 41.1 1.40e-10 59.6% 100.0%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.94 69.0 6.17e-01 80.9% 58.1%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.94 62.0 7.02e-01 72.3% 88.9%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.93 69.0 5.15e-01 83.0% 35.2%
2qm8A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.92 64.0 5.64e-01 72.3% 52.3%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.92 78.0 7.14e-01 93.6% 71.7%
2p67A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.91 62.0 5.44e-01 70.2% 50.8%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.90 64.0 5.82e-01 78.7% 58.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.88 78.0 5.91e-01 100.0% 43.1%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.88 67.0 4.65e-01 80.9% 27.5%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.86 62.0 4.40e-01 80.9% 27.7%
2olvB02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.86 65.0 4.21e-01 80.9% 20.0%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.85 59.0 5.30e-01 76.6% 54.0%
3u4qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 63.0 3.93e-01 83.0% 16.7%
3dfzA02 1.10.8.610 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like 0.81 62.0 5.32e-01 93.6% 52.7%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.79 65.0 5.11e-01 91.5% 44.3%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.77 58.0 5.69e-01 95.7% 75.0%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.76 58.0 5.69e-01 83.0% 80.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.75 62.0 4.50e-01 100.0% 41.0%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.75 64.0 3.88e-01 100.0% 14.3%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.74 59.0 4.63e-01 89.4% 42.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 60.0 5.15e-01 89.4% 59.5%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 56.0 4.56e-01 87.2% 56.7%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 58.0 4.97e-01 100.0% 56.4%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 55.0 4.48e-01 89.4% 47.6%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 49.0 4.16e-01 80.9% 49.4%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.65 43.0 3.05e-01 78.7% 23.2%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 42.0 2.98e-01 70.2% 21.5%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 53.0 3.46e-01 95.7% 29.0%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 44.0 2.78e-01 80.9% 46.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973870 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.99 78.0 4.69e-01 83.0% 15.3%
3631184 3151.1.1.0 ↗ alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 0.99 77.0 7.86e-01 80.9% 86.7%
3188198 3151.1.1.0 ↗ alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 0.98 78.0 8.41e-01 83.0% 100.0%
3725377 192.15.1.44 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 0.98 92.0 7.13e-01 100.0% 52.2%
3491473 192.15.1.3 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core 0.97 93.0 7.17e-01 100.0% 52.2%
3539738 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.97 80.0 4.95e-01 87.2% 18.2%
2772104 103.1.1.13 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RNA_pol_Rpo13 0.97 72.0 7.49e-01 78.7% 84.1%
5036455 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.96 81.0 4.79e-01 95.7% 14.5%
4620052 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.95 88.0 5.06e-01 100.0% 12.9%
3282520 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.93 82.0 7.07e-01 95.7% 64.3%
3438984 192.15.1.176 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Cornichon 0.91 83.0 6.73e-01 100.0% 56.6%
3269863 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.91 81.0 4.63e-01 100.0% 11.6%
4937908 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.90 64.0 4.28e-01 74.5% 22.9%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.90 80.0 5.51e-01 100.0% 31.5%
4057629 3869.1.1.1 ↗ alpha arrays › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Ribosomal_L27_C 0.88 68.0 4.32e-01 83.0% 18.6%
3769584 4146.1.1.4 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › FAM216B 0.88 80.0 6.56e-01 100.0% 57.5%
4220406 375.1.9.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › GvpG 0.86 66.0 5.71e-01 83.0% 55.9%
4433527 109.4.1.3336 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, ANAPC3, CHIP_TPR_N 0.86 78.0 4.97e-01 100.0% 23.4%
3988447 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.86 73.0 6.93e-01 93.6% 81.8%
3930836 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.85 73.0 5.34e-01 100.0% 37.5%
3189978 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.84 76.0 5.64e-01 100.0% 41.7%
3975170 2485.1.1.6 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.84 74.0 4.63e-01 100.0% 29.6%
3663440 109.4.1.359 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.81 70.0 3.92e-01 97.9% 8.5%
4020233 101.42.1.0 ↗ alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins 0.63 50.0 4.82e-01 93.6% 80.0%