←Back to structures

IMGVR_UViG_3300038417_000033-3300038417-Ga0427931_0003766_18009_18206

Arc-Vir

IMGVR_UViG_3300038417_000033-3300038417-Ga0427931_0003766_18009_18206

Identity

Kingdom:
archaea

Quality

71.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-65
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 52.0 3.53e-01 96.7% 97.1%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.60 52.0 3.59e-01 95.1% 91.8%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.57 40.0 3.96e-01 100.0% 68.2%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 31.0 3.26e-01 75.4% 58.2%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 42.0 3.51e-01 82.0% 53.4%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 47.0 3.42e-01 93.4% 55.5%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 40.0 3.32e-01 80.3% 74.3%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.51 40.0 3.25e-01 90.2% 100.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4525886 109.4.1.1360 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.73 52.0 2.96e-01 100.0% 7.4%
3917386 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.70 51.0 3.62e-01 100.0% 26.9%
3725284 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 34.0 2.92e-01 77.0% 31.6%
3959053 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 46.0 3.24e-01 93.4% 24.3%
4624392 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.65 59.0 3.65e-01 100.0% 65.3%
5040841 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.65 50.0 3.14e-01 82.0% 94.0%
5027458 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.64 44.0 3.04e-01 70.5% 25.7%
3279994 7579.1.1.23 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II 0.64 46.0 2.86e-01 100.0% 13.8%
5036196 2002.1.1.57 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.63 47.0 3.03e-01 93.4% 18.8%
3655226 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.62 42.0 3.26e-01 70.5% 67.4%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 45.0 3.73e-01 90.2% 88.7%
3603146 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.53 41.0 2.83e-01 95.1% 75.8%
4224102 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.52 47.0 2.84e-01 100.0% 75.4%
3716610 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.27e-01 80.3% 67.0%
3313968 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.51 35.0 2.59e-01 73.8% 26.1%