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IMGVR_UViG_3300038417_000518-3300038417-Ga0427931_0015983_1_303
Arc-VirIMGVR_UViG_3300038417_000518-3300038417-Ga0427931_0015983_1_303
Identity
- Kingdom:
- archaea
Quality
63.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 53-100
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.62 | 39.0 | 3.22e-01 | 87.5% | 33.7% |
| 4p6bB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 41.0 | 2.48e-01 | 85.4% | 85.4% |
| 2d44A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 40.0 | 2.53e-01 | 83.3% | 94.4% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.52 | 36.0 | 3.47e-01 | 75.0% | 96.4% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 33.0 | 2.54e-01 | 85.4% | 26.3% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.51 | 37.0 | 3.47e-01 | 93.8% | 61.3% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 35.0 | 2.84e-01 | 72.9% | 64.2% |
| 6bs6A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 2.90e-01 | 81.2% | 79.3% |
| 3mhsA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 37.0 | 2.93e-01 | 97.9% | 33.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025131 | 192.11.1.5 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › PF26148 | 0.65 | 45.0 | 3.59e-01 | 91.7% | 36.0% |
| 3402823 | 192.10.1.13 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › PF26148 | 0.65 | 45.0 | 3.44e-01 | 91.7% | 31.3% |
| 3892614 | 376.1.1.100 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 | 0.64 | 45.0 | 3.70e-01 | 91.7% | 40.0% |
| 3230775 | 192.1.1.25 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C | 0.64 | 45.0 | 3.43e-01 | 91.7% | 32.7% |
| 3240391 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.64 | 43.0 | 4.82e-01 | 97.9% | 97.1% |
| 3543532 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.64 | 44.0 | 4.72e-01 | 93.8% | 87.5% |
| 3380329 | 376.1.1.120 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Vps39_C | 0.64 | 45.0 | 4.17e-01 | 91.7% | 60.0% |
| 3860133 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 44.0 | 2.49e-01 | 91.7% | 6.2% |
| 3622491 | 3826.1.1.35 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › PF26148 | 0.63 | 44.0 | 3.43e-01 | 91.7% | 33.6% |
| 4943351 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 43.0 | 4.14e-01 | 89.6% | 63.6% |
| None | — | 0.62 | 43.0 | 2.44e-01 | 93.8% | 6.4% | |
| 3688382 | 376.1.1.106 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 | 0.58 | 42.0 | 4.11e-01 | 91.7% | 72.7% |
| 3891696 | 377.1.1.20 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 | 0.57 | 39.0 | 4.17e-01 | 89.6% | 87.5% |
| 3738333 | 376.1.3.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 | 0.57 | 40.0 | 3.09e-01 | 91.7% | 32.2% |
| 4013155 | 376.1.1.100 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 | 0.56 | 39.0 | 3.07e-01 | 91.7% | 31.3% |
| 3843341 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.54 | 46.0 | 4.10e-01 | 95.8% | 65.7% |
| 3281823 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.53 | 31.0 | 2.22e-01 | 77.1% | 16.7% |
| 3541051 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.53 | 47.0 | 4.13e-01 | 100.0% | 68.6% |
| 4975938 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 2.46e-01 | 72.9% | 30.0% |
| 4176189 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.52 | 35.0 | 2.98e-01 | 79.2% | 38.8% |
| 3531315 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 41.0 | 3.63e-01 | 100.0% | 61.4% |
| 5005288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 39.0 | 2.84e-01 | 89.6% | 78.7% |
| 3503113 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.51 | 41.0 | 3.27e-01 | 100.0% | 42.9% |
| 3563021 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.51 | 39.0 | 3.54e-01 | 93.8% | 60.0% |