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IMGVR_UViG_3300038493_000007-3300038493-Ga0188167_0101_20035_20388

Arc-Vir

IMGVR_UViG_3300038493_000007-3300038493-Ga0188167_0101_20035_20388

Identity

Kingdom:
archaea

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-114
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 39.0 4.66e-01 79.5% 96.0%
2z1qB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 45.0 4.27e-01 82.1% 89.7%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 40.0 4.28e-01 78.6% 82.5%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.57 43.0 4.45e-01 85.7% 84.6%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 44.0 3.90e-01 100.0% 61.3%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 30.0 3.70e-01 84.8% 87.1%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.54 47.0 3.26e-01 99.1% 97.1%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.53 26.0 3.00e-01 88.4% 62.4%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 36.0 4.01e-01 79.5% 94.1%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 36.0 3.52e-01 70.5% 65.6%
6a95A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 37.0 3.58e-01 73.2% 69.0%
5g0gA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.51 43.0 3.10e-01 94.6% 66.1%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.94e-01 93.8% 27.9%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.50 33.0 3.62e-01 87.5% 83.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718416 601.16.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.61 44.0 3.94e-01 75.0% 89.0%
4949603 3718.1.1.34 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › PF26161 0.60 40.0 4.54e-01 75.0% 90.6%
3582455 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.59 39.0 4.62e-01 75.9% 100.0%
3591879 604.13.1.0 ↗ alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.59 42.0 4.03e-01 80.4% 61.5%
54292 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.59 41.0 4.08e-01 71.4% 80.9%
5079439 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.58 39.0 4.02e-01 74.1% 72.4%
4381446 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.57 52.0 4.04e-01 100.0% 69.6%
3694800 180.1.1.6 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT 0.57 47.0 3.87e-01 89.3% 66.8%
3829016 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 41.0 3.98e-01 75.9% 71.2%
3925268 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 40.0 4.26e-01 75.9% 87.0%
3597240 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.55 39.0 3.80e-01 73.2% 71.2%
5046472 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.54 40.0 4.27e-01 77.7% 94.7%
5060007 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 38.0 3.66e-01 88.4% 63.7%
3962320 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 39.0 3.88e-01 78.6% 80.0%
3915254 563.2.1.0 ↗ alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like 0.52 39.0 3.66e-01 90.2% 62.9%
3205238 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 38.0 2.65e-01 75.0% 79.7%
4412725 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 3.37e-01 100.0% 47.9%
4880236 603.2.1.1 ↗ alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.51 38.0 4.02e-01 78.6% 96.0%
5071393 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 40.0 3.69e-01 88.4% 64.7%
2100898 106.1.1.6 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › MPAB_Lcp_cat 0.51 44.0 3.14e-01 100.0% 61.6%
4114241 4952.1.1.0 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.50 34.0 3.56e-01 89.3% 76.0%