Back to structures

IMGVR_UViG_3300038673_000600-3300038673-Ga0416707_004519_3554_3748

Arc-Vir

IMGVR_UViG_3300038673_000600-3300038673-Ga0416707_004519_3554_3748

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-62
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 55.0 4.95e-01 72.7% 89.2%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 47.0 3.23e-01 100.0% 19.5%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 48.0 3.54e-01 100.0% 26.8%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 56.0 4.72e-01 100.0% 50.6%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 47.0 3.22e-01 100.0% 19.9%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 45.0 3.09e-01 100.0% 18.7%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.67 58.0 3.81e-01 100.0% 25.2%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 57.0 3.79e-01 100.0% 24.9%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 55.0 4.19e-01 100.0% 39.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.29e-01 100.0% 95.7%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.66 58.0 3.94e-01 100.0% 28.6%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 54.0 4.05e-01 100.0% 36.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 42.0 3.32e-01 87.3% 31.8%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 55.0 4.21e-01 100.0% 41.1%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 57.0 4.28e-01 100.0% 40.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 56.0 4.23e-01 100.0% 40.5%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 3.97e-01 100.0% 28.8%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 54.0 4.14e-01 100.0% 39.8%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.12e-01 100.0% 83.9%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 51.0 4.15e-01 100.0% 46.5%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 54.0 4.14e-01 100.0% 90.1%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 55.0 3.70e-01 100.0% 25.6%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 3.69e-01 100.0% 26.8%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 3.93e-01 100.0% 30.9%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.64 53.0 4.31e-01 100.0% 49.5%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 3.74e-01 100.0% 28.4%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 53.0 3.93e-01 100.0% 36.4%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 56.0 4.08e-01 100.0% 38.0%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 47.0 3.32e-01 83.6% 86.9%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 3.70e-01 100.0% 27.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.33e-01 100.0% 49.1%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.45e-01 100.0% 78.8%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 3.94e-01 100.0% 51.8%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 50.0 4.04e-01 100.0% 46.8%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 3.77e-01 100.0% 43.9%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 54.0 4.24e-01 100.0% 59.8%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 3.65e-01 100.0% 43.7%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.59 51.0 4.88e-01 100.0% 83.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.17e-01 100.0% 75.0%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 49.0 3.55e-01 100.0% 85.2%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 3.72e-01 100.0% 36.2%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 2.73e-01 85.5% 26.0%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 43.0 3.44e-01 85.5% 64.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 3.68e-01 100.0% 47.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 45.0 3.28e-01 100.0% 29.3%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.57e-01 100.0% 45.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.90e-01 100.0% 69.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 50.0 3.78e-01 100.0% 63.9%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 49.0 3.22e-01 100.0% 82.1%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.61e-01 100.0% 41.1%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 47.0 3.40e-01 100.0% 46.5%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.62e-01 100.0% 49.5%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 3.24e-01 100.0% 37.2%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.18e-01 100.0% 38.8%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 44.0 3.52e-01 100.0% 58.9%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 44.0 3.04e-01 100.0% 94.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.92e-01 100.0% 70.1%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 4.24e-01 100.0% 98.3%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.27e-01 98.2% 50.0%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.84e-01 100.0% 77.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267345 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 56.0 5.62e-01 100.0% 81.8%
4961770 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.69 58.0 4.39e-01 100.0% 40.8%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.29e-01 100.0% 85.5%
3593636 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 4.74e-01 100.0% 78.2%
5016426 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.67 57.0 4.04e-01 100.0% 32.1%
4125768 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.66 55.0 3.98e-01 100.0% 33.3%
4926888 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.66 56.0 4.19e-01 100.0% 39.2%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 50.0 4.84e-01 100.0% 73.8%
4947401 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 57.0 4.09e-01 100.0% 34.2%
5062740 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.66 55.0 3.74e-01 100.0% 27.0%
4073608 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.65 58.0 4.01e-01 100.0% 40.6%
5048653 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.65 56.0 4.04e-01 100.0% 34.2%
5001346 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 3.67e-01 100.0% 34.4%
4997723 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.65 56.0 4.02e-01 100.0% 34.2%
4944685 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.65 56.0 4.07e-01 100.0% 35.3%
4981706 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.65 55.0 4.01e-01 100.0% 34.4%
4194689 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.65 58.0 3.42e-01 100.0% 18.5%
5013086 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.64 57.0 3.80e-01 100.0% 81.3%
3951474 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.64 54.0 3.61e-01 100.0% 24.3%
5018380 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.64 53.0 3.89e-01 100.0% 34.0%
4400460 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 55.0 4.06e-01 100.0% 37.9%
5047862 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 55.0 4.01e-01 100.0% 35.8%
4129418 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 54.0 4.10e-01 100.0% 39.3%
3514467 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 56.0 4.25e-01 100.0% 60.8%
2532980 219.1.1.53 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.63 55.0 3.57e-01 100.0% 28.0%
4583479 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 56.0 3.94e-01 100.0% 78.6%
3518574 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 50.0 3.64e-01 100.0% 31.0%
4008655 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 54.0 3.96e-01 100.0% 36.6%
3787756 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 56.0 4.00e-01 100.0% 34.8%
3587958 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.63e-01 100.0% 84.4%
3248246 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 53.0 4.14e-01 100.0% 57.7%
3521189 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 3.92e-01 100.0% 44.8%
4331393 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 52.0 3.90e-01 100.0% 37.9%
3385776 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 52.0 3.93e-01 100.0% 39.3%
1108152 11.1.1.211 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5060 0.61 46.0 3.91e-01 100.0% 50.6%
5029031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.51e-01 100.0% 76.7%
3953421 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.61 54.0 3.99e-01 100.0% 39.3%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.59 50.0 4.80e-01 100.0% 95.4%
3258963 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 3.94e-01 100.0% 56.2%
4380184 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.57 46.0 4.06e-01 94.5% 74.2%
4963012 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 50.0 4.08e-01 100.0% 85.7%
5012995 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.57 47.0 3.28e-01 100.0% 31.7%
5055397 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.77e-01 100.0% 47.6%
3248299 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.56 44.0 2.71e-01 100.0% 24.8%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 42.0 4.23e-01 100.0% 83.6%
3505198 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 49.0 3.37e-01 100.0% 29.7%
5055398 11.1.1.793 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.56 46.0 3.77e-01 100.0% 48.6%
4938115 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.55 48.0 4.39e-01 100.0% 82.4%
3885658 11.1.1.126 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL4Ra_N 0.55 44.0 3.74e-01 100.0% 51.6%
4980573 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 49.0 3.36e-01 100.0% 33.7%
4441821 11.1.1.46 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha-amylase_N 0.55 46.0 3.50e-01 100.0% 38.5%
4024322 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.16e-01 100.0% 80.0%
4988712 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.53e-01 100.0% 48.0%
1933551 11.1.1.323 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AIMA-like_N 0.52 46.0 3.51e-01 100.0% 54.7%
4031371 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.52 45.0 3.40e-01 100.0% 90.7%
3267591 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.42e-01 100.0% 40.0%
4932286 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.51 44.0 4.06e-01 100.0% 79.5%
4990442 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.51 44.0 3.93e-01 100.0% 73.8%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 42.0 3.90e-01 100.0% 76.0%