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IMGVR_UViG_3300038673_000745-3300038673-Ga0416707_000196_39466_41595

Arc-Vir

IMGVR_UViG_3300038673_000745-3300038673-Ga0416707_000196_39466_41595

Identity

Kingdom:
archaea

Quality

60.7 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 103-262_374-420
PDB
Domain cluster: rep: KC821618.1__AGO48403.1__Phi10-1_gp062__00062__D33-74_121-234_364-393
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.80 45.0 5.81e-01 87.0% 91.3%
5jtwA06 6.20.50.160 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 17.0 2.92e-01 95.2% 80.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942943 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.68 51.0 4.77e-01 77.3% 92.2%
5039294 4038.1.1.1 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.53 51.0 4.56e-01 100.0% 85.7%
D2 high residues 645-704
PDB
D3 medium residues 36-89
PDB
D4 medium residues 265-368
PDB
D5 medium residues 426-465
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.94 67.0 5.02e-01 80.0% 34.5%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.92 77.0 6.31e-01 90.0% 52.9%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.90 67.0 4.57e-01 80.0% 24.6%
1cukA03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.90 58.0 5.46e-01 72.5% 56.2%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.88 74.0 5.39e-01 92.5% 36.9%
1ss3A00 1.10.287.720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 0.85 61.0 5.71e-01 85.0% 62.0%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.84 56.0 4.59e-01 77.5% 38.9%
2ahrA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.83 67.0 4.89e-01 90.0% 34.9%
1crnA00 3.30.1350.10 Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like 0.82 60.0 5.70e-01 77.5% 87.0%
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 55.0 5.27e-01 80.0% 60.9%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.82 47.0 3.89e-01 72.5% 34.3%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.80 60.0 5.82e-01 85.0% 73.3%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.78 59.0 4.18e-01 82.5% 86.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 65.0 5.33e-01 100.0% 57.7%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.77 61.0 5.72e-01 92.5% 75.0%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.76 60.0 3.97e-01 87.5% 91.0%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.76 57.0 4.48e-01 85.0% 56.8%
3fdjA01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.75 57.0 4.14e-01 82.5% 90.8%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 55.0 3.79e-01 85.0% 23.2%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 61.0 4.13e-01 100.0% 41.2%
1nvpB00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 51.0 5.11e-01 97.5% 83.7%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.82e-01 95.0% 74.1%
1miwA03 1.20.58.560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 50.0 3.79e-01 92.5% 36.0%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.61 49.0 3.89e-01 92.5% 59.6%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 41.0 4.03e-01 72.5% 72.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990523 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.90 75.0 5.53e-01 90.0% 38.9%
3831860 365.1.1.1 ↗ few secondary structure elements › Crambin-like › Crambin-like › Crambin-like › Thionin 0.89 66.0 6.30e-01 77.5% 82.2%
3520048 129.1.1.14 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF2520 0.89 73.0 5.12e-01 90.0% 32.2%
3286823 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.89 72.0 5.05e-01 90.0% 30.8%
3685821 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.88 70.0 5.01e-01 90.0% 31.3%
3465158 103.1.1.1 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.86 69.0 6.37e-01 90.0% 70.0%
3483031 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 74.0 6.43e-01 97.5% 66.7%
3881712 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.84 68.0 4.69e-01 90.0% 27.4%
3255785 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.84 68.0 4.97e-01 92.5% 34.5%
3257458 633.6.1.2 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.81 71.0 4.64e-01 100.0% 25.6%
4019694 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 5.92e-01 90.0% 72.0%
3805859 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 5.26e-01 85.0% 60.0%
4991198 2.1.1.359 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HupF_HypC 0.78 60.0 4.33e-01 90.0% 29.6%
4663888 5069.1.3.126 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLDc_N 0.77 62.0 5.02e-01 92.5% 46.3%
3344802 6158.1.1.0 ↗ alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.67 54.0 4.70e-01 92.5% 56.9%