←Back to structures
IMGVR_UViG_3300038673_000745-3300038673-Ga0416707_000196_9857_10384
Arc-VirIMGVR_UViG_3300038673_000745-3300038673-Ga0416707_000196_9857_10384
Identity
- Kingdom:
- archaea
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 102-173
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7rkxR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 48.0 | 3.23e-01 | 80.6% | 86.8% |
| 1oisA01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.63 | 55.0 | 5.04e-01 | 100.0% | 75.0% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.63 | 54.0 | 4.83e-01 | 100.0% | 68.5% |
| 6he0A01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.61 | 50.0 | 4.39e-01 | 88.9% | 74.8% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 46.0 | 3.48e-01 | 81.9% | 94.5% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 47.0 | 3.88e-01 | 83.3% | 86.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 42.0 | 3.92e-01 | 70.8% | 92.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.60 | 43.0 | 4.38e-01 | 79.2% | 84.7% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.60 | 35.0 | 4.09e-01 | 80.6% | 82.7% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.59 | 47.0 | 4.21e-01 | 87.5% | 92.5% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 48.0 | 3.85e-01 | 91.7% | 87.2% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.58 | 43.0 | 3.98e-01 | 80.6% | 100.0% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.58 | 45.0 | 4.13e-01 | 90.3% | 84.5% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.58 | 45.0 | 4.00e-01 | 87.5% | 78.8% |
| 3hgkE00 | 1.20.1280.110 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 50.0 | 4.91e-01 | 100.0% | 98.7% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 45.0 | 3.83e-01 | 86.1% | 91.6% |
| 1h99A01 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.57 | 47.0 | 4.18e-01 | 93.1% | 97.1% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.56 | 49.0 | 4.50e-01 | 100.0% | 80.4% |
| 2yb5F01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.56 | 43.0 | 4.10e-01 | 84.7% | 72.1% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.55 | 41.0 | 3.62e-01 | 79.2% | 78.3% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.55 | 40.0 | 3.62e-01 | 79.2% | 82.4% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 45.0 | 3.71e-01 | 94.4% | 89.4% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.53 | 45.0 | 4.24e-01 | 95.8% | 79.3% |
| 2hsnA02 | 1.20.1050.110 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 38.0 | 3.37e-01 | 76.4% | 78.5% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 36.0 | 3.27e-01 | 73.6% | 96.1% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.52 | 42.0 | 3.64e-01 | 98.6% | 65.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 51.0 | 5.28e-01 | 100.0% | 90.8% |
| 4291508 | 605.1.1.287 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF27260 | 0.66 | 52.0 | 4.32e-01 | 86.1% | 80.8% |
| 3735339 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.65 | 51.0 | 3.50e-01 | 86.1% | 63.5% |
| 3278829 | 7019.1.1.3 ↗ | alpha duplicates or obligate multimers › anti-CRISPR protein AcrE1 › anti-CRISPR protein AcrE1 › anti-CRISPR protein AcrE1 › DUF3043 | 0.64 | 54.0 | 4.72e-01 | 97.2% | 92.2% |
| 4595954 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.63 | 55.0 | 5.22e-01 | 98.6% | 83.5% |
| 4436943 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 53.0 | 5.22e-01 | 97.2% | 90.0% |
| 3587597 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.62 | 49.0 | 4.11e-01 | 86.1% | 87.2% |
| 4226337 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.62 | 52.0 | 5.11e-01 | 97.2% | 90.0% |
| 4182059 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.61 | 46.0 | 4.02e-01 | 81.9% | 76.4% |
| 3217233 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 47.0 | 4.40e-01 | 90.3% | 88.9% |
| 3514483 | 532.2.1.10 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › NTP_transf_7 | 0.58 | 40.0 | 3.45e-01 | 72.2% | 88.7% |
| 4928215 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 50.0 | 4.56e-01 | 95.8% | 89.5% |
| 4408504 | 3171.1.1.0 ↗ | alpha arrays › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain | 0.57 | 44.0 | 4.24e-01 | 97.2% | 72.9% |
| 3398942 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 39.0 | 2.83e-01 | 73.6% | 51.5% |
| 3974337 | 210.1.2.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 | 0.55 | 42.0 | 2.71e-01 | 86.1% | 70.5% |
| 3190830 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.55 | 47.0 | 3.27e-01 | 100.0% | 57.4% |
| 3268456 | 109.6.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF | 0.55 | 41.0 | 3.18e-01 | 79.2% | 40.0% |
| 4982107 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.55 | 41.0 | 2.63e-01 | 83.3% | 87.2% |
| 4034108 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.55 | 42.0 | 3.41e-01 | 87.5% | 72.9% |
| 4993188 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.54 | 47.0 | 3.51e-01 | 100.0% | 64.1% |
| 4957479 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 41.0 | 3.03e-01 | 81.9% | 42.0% |
| 4963958 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.53 | 44.0 | 3.06e-01 | 94.4% | 41.5% |
| 3499029 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 40.0 | 2.63e-01 | 83.3% | 44.3% |
| 3590182 | 4979.1.1.0 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › C-terminal domain of Hypothetical protein MPN330 › C-terminal domain of Hypothetical protein MPN330 | 0.51 | 36.0 | 3.47e-01 | 75.0% | 71.8% |
| 3374473 | 5010.1.1.0 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV | 0.51 | 43.0 | 3.26e-01 | 100.0% | 81.0% |
| 3645762 | 1075.1.2.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › SYS1 (DEPRECATED) | 0.51 | 42.0 | 3.47e-01 | 91.7% | 56.2% |
| 1890017 | 503.1.1.2 ↗ | extended segments › N-terminal domain of bifunctional PutA protein › N-terminal domain of bifunctional PutA protein › N-terminal domain of bifunctional PutA protein › Pro_dh-DNA_bdg,PRODH | 0.50 | 41.0 | 3.31e-01 | 100.0% | 52.0% |
D2
medium
residues 15-99
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.76 | 55.0 | 5.11e-01 | 75.3% | 61.2% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.76 | 54.0 | 4.96e-01 | 72.9% | 62.3% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 51.0 | 4.67e-01 | 94.1% | 81.4% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.56 | 39.0 | 3.30e-01 | 72.9% | 91.6% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.55 | 40.0 | 2.74e-01 | 78.8% | 49.1% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.52 | 36.0 | 3.64e-01 | 76.5% | 70.9% |
| 5y9sC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.80e-01 | 78.8% | 80.5% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.78e-01 | 82.4% | 78.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979104 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.72 | 63.0 | 3.93e-01 | 94.1% | 63.3% |
| 4508258 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.55 | 38.0 | 3.17e-01 | 71.8% | 91.3% |
| 1144720 | 633.20.1.1 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein PF1176 › Hypothetical protein PF1176 › DUF3216 | 0.52 | 36.0 | 3.66e-01 | 76.5% | 71.8% |