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IMGVR_UViG_3300038675_000869-3300038675-Ga0416708_006709_2087_2278
Arc-VirIMGVR_UViG_3300038675_000869-3300038675-Ga0416708_006709_2087_2278
Identity
- Kingdom:
- archaea
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-49
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.67 | 45.0 | 4.10e-01 | 100.0% | 51.9% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 45.0 | 3.60e-01 | 100.0% | 35.4% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.64 | 44.0 | 4.21e-01 | 94.9% | 52.2% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 3.92e-01 | 97.4% | 47.6% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.63 | 45.0 | 4.01e-01 | 100.0% | 50.9% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 44.0 | 4.33e-01 | 94.9% | 69.0% |
| 3bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 42.0 | 2.92e-01 | 82.1% | 20.1% |
| 2pm6A00 | 1.25.40.1030 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 39.0 | 2.30e-01 | 87.2% | 7.0% |
| 7qzqA01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.60 | 48.0 | 2.89e-01 | 100.0% | 23.7% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 47.0 | 3.88e-01 | 89.7% | 59.2% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.60 | 39.0 | 3.44e-01 | 84.6% | 39.7% |
| 4dwsA01 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 45.0 | 3.13e-01 | 82.1% | 25.2% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 50.0 | 3.60e-01 | 100.0% | 34.7% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 41.0 | 3.85e-01 | 100.0% | 56.1% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 39.0 | 3.96e-01 | 87.2% | 69.2% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 44.0 | 3.99e-01 | 100.0% | 58.9% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 42.0 | 2.44e-01 | 82.1% | 13.9% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 3.27e-01 | 82.1% | 33.7% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.57 | 45.0 | 4.00e-01 | 87.2% | 62.5% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.57 | 38.0 | 3.12e-01 | 71.8% | 32.2% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 37.0 | 2.78e-01 | 71.8% | 61.2% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.55 | 42.0 | 2.96e-01 | 89.7% | 58.7% |
| 4g1uD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 2.35e-01 | 87.2% | 11.7% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 41.0 | 3.02e-01 | 89.7% | 94.3% |
| 1nqlB00 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.54 | 39.0 | 3.68e-01 | 82.1% | 64.6% |
| 2ewlA00 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 40.0 | 3.72e-01 | 89.7% | 80.4% |
| 8a9nA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 40.0 | 2.82e-01 | 84.6% | 27.5% |
| 1fi8C00 | 2.60.40.550 | Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin | 0.53 | 38.0 | 3.21e-01 | 84.6% | 47.4% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.52 | 40.0 | 3.21e-01 | 74.4% | 52.6% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.51 | 41.0 | 2.69e-01 | 100.0% | 19.1% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 2.88e-01 | 94.9% | 26.6% |
| 1g8kC01 | 2.60.40.4210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.11e-01 | 97.4% | 92.2% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.51 | 37.0 | 2.70e-01 | 94.9% | 52.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3933019 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.74 | 57.0 | 5.08e-01 | 89.7% | 78.0% |
| 4955368 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 45.0 | 3.29e-01 | 87.2% | 25.0% |
| 5050302 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.68 | 49.0 | 3.83e-01 | 84.6% | 37.5% |
| 547 | 4.1.1.49 ↗ | beta barrels › SH3 › SH3 › SH3 › KorB_C | 0.66 | 46.0 | 4.20e-01 | 100.0% | 53.7% |
| 3408588 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.65 | 49.0 | 4.11e-01 | 100.0% | 47.1% |
| 3528045 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.63 | 41.0 | 4.02e-01 | 87.2% | 57.8% |
| 3397117 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.61 | 42.0 | 3.54e-01 | 94.9% | 41.5% |
| 5049534 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 43.0 | 3.43e-01 | 94.9% | 35.3% |
| 4883095 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.61 | 42.0 | 4.50e-01 | 71.8% | 100.0% |
| 3922649 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.61 | 43.0 | 3.68e-01 | 76.9% | 55.4% |
| 3908665 | 4.1.1.227 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B | 0.60 | 45.0 | 3.51e-01 | 100.0% | 34.7% |
| 3988582 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.60 | 43.0 | 2.96e-01 | 79.5% | 97.9% |
| 985827 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.60 | 45.0 | 3.55e-01 | 82.1% | 39.7% |
| 3730089 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.59 | 40.0 | 3.79e-01 | 92.3% | 57.1% |
| 1122362 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.59 | 38.0 | 2.25e-01 | 87.2% | 6.7% |
| 4475796 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 48.0 | 4.30e-01 | 100.0% | 65.5% |
| 3521873 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.58 | 38.0 | 3.04e-01 | 87.2% | 30.0% |
| 4062751 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.58 | 48.0 | 4.15e-01 | 100.0% | 60.0% |
| 379970 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.58 | 37.0 | 3.81e-01 | 76.9% | 100.0% |
| 4470870 | 387.2.1.0 ↗ | few secondary structure elements › omega toxin-like | 0.57 | 42.0 | 4.21e-01 | 82.1% | 90.0% |
| 3261577 | 543.1.1.6 ↗ | few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › PF29739 | 0.57 | 44.0 | 3.12e-01 | 94.9% | 94.0% |
| 4968647 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 3.90e-01 | 79.5% | 73.3% |
| 3275475 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.57 | 45.0 | 2.87e-01 | 92.3% | 63.9% |
| 3268512 | 391.1.2.8 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Dicty_CTDC | 0.56 | 38.0 | 3.29e-01 | 84.6% | 35.9% |
| 5076094 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.56 | 40.0 | 3.51e-01 | 76.9% | 91.7% |
| 3568886 | 2492.1.1.29 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like | 0.56 | 40.0 | 2.61e-01 | 82.1% | 40.9% |
| 5001498 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.56 | 42.0 | 3.06e-01 | 84.6% | 33.3% |
| 3592923 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.55 | 46.0 | 3.36e-01 | 94.9% | 40.0% |
| 3998140 | 387.1.1.34 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › EB | 0.55 | 38.0 | 3.55e-01 | 79.5% | 58.0% |
| 5067181 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.54 | 39.0 | 2.36e-01 | 100.0% | 14.7% |
| 4968862 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 38.0 | 3.69e-01 | 84.6% | 64.4% |
| 3973035 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.52 | 43.0 | 2.51e-01 | 100.0% | 10.0% |
| 3411509 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.52 | 35.0 | 3.40e-01 | 92.3% | 60.0% |
| 3519023 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.51 | 42.0 | 3.40e-01 | 94.9% | 50.0% |
| 4958553 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 37.0 | 2.40e-01 | 79.5% | 23.6% |
| 3410260 | 109.4.1.3503 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28415, PF29875 | 0.51 | 35.0 | 2.07e-01 | 89.7% | 7.8% |
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.51 | 42.0 | 3.86e-01 | 100.0% | 76.4% |
| 3502807 | 389.1.1.95 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Mua-3 | 0.50 | 34.0 | 3.29e-01 | 87.2% | 56.0% |