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IMGVR_UViG_3300038731_000001-3300038731-Ga0188182_0258_1937_2221

Arc-Vir

IMGVR_UViG_3300038731_000001-3300038731-Ga0188182_0258_1937_2221

Quality

74.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-78
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 67.0 6.62e-01 100.0% 74.6%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 69.0 6.56e-01 100.0% 71.2%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 73.0 6.62e-01 100.0% 70.7%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 65.0 6.50e-01 100.0% 80.3%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 5.59e-01 100.0% 65.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 54.0 5.75e-01 93.8% 83.9%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 68.0 6.25e-01 100.0% 84.1%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 6.11e-01 100.0% 74.7%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 6.27e-01 100.0% 85.5%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.61e-01 100.0% 73.6%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 5.73e-01 81.2% 86.2%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 55.0 5.68e-01 100.0% 86.9%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.60e-01 100.0% 70.9%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.68 54.0 5.06e-01 89.1% 87.7%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 45.0 4.27e-01 70.3% 81.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.66 54.0 4.84e-01 93.8% 71.3%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.66 52.0 4.92e-01 90.6% 81.5%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.66 45.0 4.62e-01 71.9% 93.5%
3ljkA03 1.10.1390.10 Mainly Alpha › Orthogonal Bundle › Phosphoglucose isomerase, C-terminal domain › 0.65 32.0 3.96e-01 85.9% 76.9%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 5.23e-01 95.3% 98.1%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 5.22e-01 95.3% 89.2%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 43.0 3.95e-01 70.3% 56.3%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 50.0 4.42e-01 100.0% 58.5%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.63 50.0 4.95e-01 96.9% 82.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.72e-01 81.2% 91.1%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.60 41.0 3.55e-01 70.3% 77.9%
7eqeB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 50.0 3.81e-01 100.0% 58.0%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.59 43.0 3.40e-01 85.9% 37.4%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 4.07e-01 93.8% 54.5%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 49.0 4.53e-01 100.0% 71.8%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.58 45.0 4.03e-01 85.9% 72.3%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 43.0 4.08e-01 79.7% 85.9%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 40.0 3.53e-01 73.4% 64.9%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.57 48.0 4.11e-01 96.9% 93.4%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.56 43.0 3.82e-01 81.2% 94.5%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.55 46.0 4.46e-01 95.3% 98.7%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 45.0 3.04e-01 96.9% 43.4%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 42.0 3.86e-01 87.5% 65.2%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 44.0 4.05e-01 100.0% 85.1%
2lrdA00 1.10.10.1840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 37.0 3.82e-01 75.0% 77.0%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.53 44.0 4.15e-01 93.8% 88.5%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 44.0 3.39e-01 100.0% 82.0%
1dk8A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.52 37.0 3.35e-01 75.0% 70.6%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.50 40.0 3.73e-01 92.2% 76.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 74.0 5.85e-01 100.0% 54.4%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 6.53e-01 95.3% 90.0%
2639344 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 72.0 5.80e-01 100.0% 55.6%
4946290 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 6.56e-01 93.8% 90.8%
5046136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 70.0 5.41e-01 100.0% 47.9%
4972323 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.78 72.0 4.51e-01 100.0% 22.0%
4948481 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.77 70.0 4.53e-01 100.0% 25.3%
3978496 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 52.0 5.12e-01 96.9% 65.7%
3789626 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.89e-01 87.5% 83.1%
3935995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.75 63.0 6.04e-01 98.4% 80.0%
3479827 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 5.87e-01 100.0% 70.5%
4635301 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.74 63.0 4.84e-01 93.8% 55.9%
3924283 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.28e-01 90.6% 68.4%
4947979 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 6.12e-01 96.9% 90.0%
3497764 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.73 62.0 5.62e-01 100.0% 69.7%
3988277 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.72 49.0 3.19e-01 71.9% 53.2%
3216068 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.72 60.0 5.61e-01 92.2% 80.8%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 5.86e-01 90.6% 96.4%
3505632 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.71 62.0 5.83e-01 100.0% 78.8%
3491303 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 5.20e-01 92.2% 77.9%
4030732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 5.67e-01 100.0% 88.2%
3443035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.12e-01 100.0% 61.9%
4520559 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.68 56.0 5.18e-01 93.8% 84.7%
4589278 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.67 59.0 5.06e-01 100.0% 64.8%
3326085 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 4.85e-01 92.2% 66.3%
3922607 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 4.90e-01 93.8% 94.7%
3584520 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 4.67e-01 93.8% 69.1%
147354 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.66 52.0 4.92e-01 90.6% 81.5%
4600309 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 57.0 4.96e-01 100.0% 68.0%
3185107 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 50.0 4.92e-01 90.6% 78.6%
5078022 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.65 48.0 4.48e-01 79.7% 77.5%
5045956 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 5.22e-01 100.0% 86.3%
5014572 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.64 52.0 3.92e-01 92.2% 44.2%
3594142 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.46e-01 92.2% 57.1%
3645385 108.1.1.1 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.64 49.0 3.94e-01 84.4% 60.8%
3421325 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 47.0 4.39e-01 79.7% 96.2%
4136321 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.63 54.0 5.38e-01 95.3% 100.0%
4126690 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.63 43.0 4.50e-01 78.1% 83.6%
4932863 101.1.2.947 alpha arrays › HTH › HTH › winged helix domain › PF27234 0.63 50.0 4.71e-01 92.2% 81.2%
3441899 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 54.0 5.03e-01 100.0% 78.8%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.62 49.0 4.47e-01 89.1% 67.8%
3542152 397.7.1.7 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.62 52.0 4.69e-01 98.4% 67.8%
3237526 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.61 44.0 4.00e-01 75.0% 94.1%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 43.0 4.07e-01 75.0% 93.8%
4933155 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.61 47.0 4.44e-01 92.2% 83.5%
4927487 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.60 47.0 4.59e-01 92.2% 86.7%
3829959 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.25e-01 92.2% 90.0%
3171901 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.58 47.0 4.16e-01 89.1% 75.8%
1551399 4982.2.1.1 alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mrpl_C 0.58 49.0 4.27e-01 100.0% 59.8%
4507639 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.57 47.0 4.56e-01 95.3% 94.7%
3833695 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.57 42.0 3.80e-01 92.2% 55.8%
3808410 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 38.0 3.81e-01 70.3% 69.2%
3966774 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.56 45.0 4.24e-01 90.6% 86.3%
169082 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 48.0 3.33e-01 100.0% 52.8%
3378485 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 3.07e-01 92.2% 86.8%
3502246 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 37.0 3.14e-01 73.4% 38.3%
3859287 144.1.1.0 alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.55 40.0 3.76e-01 78.1% 77.5%
4216527 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.54 43.0 3.74e-01 93.8% 92.7%
3596412 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 45.0 3.10e-01 92.2% 28.0%
3753542 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.65e-01 79.7% 84.0%