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IMGVR_UViG_3300038855_000068-3300038855-Ga0237916_00146_3622_4701
Arc-VirIMGVR_UViG_3300038855_000068-3300038855-Ga0237916_00146_3622_4701
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-153
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10123.15 best | Mu-like_Pro | 159.8 | 1.80e-46 | 89.9% | 38.9% |
D2
medium
residues 172-238
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 45.0 | 3.84e-01 | 76.1% | 71.7% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 37.0 | 3.91e-01 | 82.1% | 70.2% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.58 | 32.0 | 3.04e-01 | 77.6% | 42.7% |
| 1ciyA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.57 | 43.0 | 3.02e-01 | 82.1% | 73.3% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.57 | 40.0 | 2.97e-01 | 73.1% | 86.7% |
| 2qs8A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 41.0 | 2.73e-01 | 80.6% | 91.5% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 28.0 | 3.24e-01 | 74.6% | 66.7% |
| 1ynbA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 42.0 | 3.12e-01 | 82.1% | 78.4% |
| 2i10A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.53 | 29.0 | 3.08e-01 | 76.1% | 60.0% |
| 2yg5A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 39.0 | 2.84e-01 | 79.1% | 77.2% |
| 1o5wA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 39.0 | 2.80e-01 | 79.1% | 73.1% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 3.50e-01 | 85.1% | 59.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996122 | 518.1.1.0 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.81 | 54.0 | 4.75e-01 | 82.1% | 48.9% |
| 3227134 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.78 | 52.0 | 4.36e-01 | 70.1% | 41.8% |
| 3783883 | 650.1.1.11 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › RPT | 0.71 | 47.0 | 4.40e-01 | 80.6% | 56.2% |
| 3880432 | 603.1.1.163 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27977 | 0.69 | 58.0 | 5.22e-01 | 89.6% | 66.7% |
| 3682977 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.68 | 44.0 | 4.25e-01 | 88.1% | 57.3% |
| 3991964 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.65 | 42.0 | 4.14e-01 | 74.6% | 61.4% |
| 4357455 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.64 | 44.0 | 4.11e-01 | 77.6% | 57.6% |
| 3817511 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.60 | 40.0 | 3.63e-01 | 70.1% | 52.9% |
| 3646516 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.60 | 40.0 | 3.96e-01 | 71.6% | 66.7% |
| 3708434 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.27e-01 | 73.1% | 83.0% |
| 3505507 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.59 | 33.0 | 3.27e-01 | 80.6% | 50.0% |
| 4025109 | 130.1.1.6 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 | 0.58 | 41.0 | 4.12e-01 | 74.6% | 88.6% |
| 3471592 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.58 | 44.0 | 4.02e-01 | 82.1% | 75.6% |
| 3453638 | 109.52.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida | 0.57 | 42.0 | 2.77e-01 | 77.6% | 28.9% |
| 4683232 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.57 | 33.0 | 3.39e-01 | 76.1% | 58.5% |
| 3834200 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.56 | 35.0 | 3.50e-01 | 80.6% | 60.0% |
| 3386136 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.56 | 43.0 | 4.17e-01 | 91.0% | 72.0% |
| 3317109 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.56 | 41.0 | 2.60e-01 | 79.1% | 17.9% |
| 3592341 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.54 | 39.0 | 2.74e-01 | 77.6% | 49.6% |
| 4029399 | 101.1.1.10 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ARID | 0.54 | 38.0 | 3.36e-01 | 88.1% | 50.0% |
| 3743783 | 3588.1.1.2 ↗ | alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 | 0.53 | 42.0 | 2.66e-01 | 86.6% | 74.6% |
| 4660205 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 36.0 | 2.86e-01 | 73.1% | 74.1% |
| 5027499 | 142.3.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain | 0.50 | 42.0 | 4.02e-01 | 89.6% | 100.0% |
D3
medium
residues 249-317
Domain cluster:
rep: NC_019455.1__YP_007002939.1__F357_gp31__00031__D245-312
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10123.15 best | Mu-like_Pro | 33.9 | 3.60e-08 | 100.0% | 20.4% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.88 | 37.0 | 3.67e-01 | 94.2% | 39.7% |
| 6ircA01 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.84 | 58.0 | 4.08e-01 | 76.8% | 24.6% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.75 | 54.0 | 5.95e-01 | 76.8% | 98.2% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.75 | 66.0 | 4.69e-01 | 100.0% | 63.3% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 54.0 | 3.64e-01 | 75.4% | 24.7% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 52.0 | 5.51e-01 | 75.4% | 83.6% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.74 | 63.0 | 4.83e-01 | 94.2% | 69.0% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 50.0 | 5.21e-01 | 72.5% | 79.7% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.72 | 59.0 | 4.63e-01 | 88.4% | 73.4% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 58.0 | 4.52e-01 | 91.3% | 69.7% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.70 | 49.0 | 4.27e-01 | 72.5% | 80.2% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 48.0 | 4.98e-01 | 72.5% | 77.3% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.69 | 50.0 | 4.29e-01 | 75.4% | 50.9% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.69 | 48.0 | 4.78e-01 | 72.5% | 77.5% |
| 4xvxA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.69 | 55.0 | 4.42e-01 | 91.3% | 71.4% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 55.0 | 4.34e-01 | 92.8% | 42.7% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 49.0 | 4.78e-01 | 76.8% | 76.9% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.68 | 54.0 | 4.45e-01 | 87.0% | 52.4% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 47.0 | 4.21e-01 | 73.9% | 79.8% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 48.0 | 4.74e-01 | 76.8% | 76.0% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 54.0 | 3.99e-01 | 88.4% | 86.0% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 52.0 | 3.93e-01 | 84.1% | 67.1% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 46.0 | 4.21e-01 | 75.4% | 83.3% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 43.0 | 4.63e-01 | 72.5% | 100.0% |
| 4yt2A02 | 1.20.120.1300 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain | 0.63 | 45.0 | 3.95e-01 | 76.8% | 67.9% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 44.0 | 3.74e-01 | 78.3% | 51.7% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 42.0 | 4.08e-01 | 76.8% | 75.6% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 40.0 | 3.73e-01 | 75.4% | 87.5% |
| 3rpmA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.55 | 43.0 | 4.09e-01 | 88.4% | 88.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3853566 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.85 | 61.0 | 5.08e-01 | 75.4% | 46.1% |
| 5047384 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 56.0 | 5.83e-01 | 73.9% | 75.4% |
| 3182665 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.80 | 68.0 | 6.08e-01 | 91.3% | 98.9% |
| 4950709 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 56.0 | 5.83e-01 | 73.9% | 81.5% |
| 3241303 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.77 | 62.0 | 5.91e-01 | 87.0% | 98.8% |
| 4817720 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.75 | 54.0 | 3.47e-01 | 75.4% | 21.5% |
| 4174467 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.74 | 52.0 | 4.69e-01 | 72.5% | 60.0% |
| 3594525 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.74 | 51.0 | 4.53e-01 | 72.5% | 55.0% |
| 396389 | 632.2.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B | 0.73 | 53.0 | 5.92e-01 | 76.8% | 100.0% |
| 3737705 | 605.4.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 | 0.73 | 61.0 | 5.34e-01 | 89.9% | 99.0% |
| 5046748 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.72 | 52.0 | 5.21e-01 | 75.4% | 80.0% |
| 4952010 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.72 | 51.0 | 4.99e-01 | 73.9% | 69.3% |
| 5039649 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.71 | 51.0 | 4.21e-01 | 75.4% | 50.0% |
| 3171735 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.71 | 59.0 | 5.32e-01 | 91.3% | 91.6% |
| 3218104 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.71 | 58.0 | 4.72e-01 | 88.4% | 80.0% |
| 4024917 | 6126.1.1.1 ↗ | alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 › DUF5600 | 0.70 | 52.0 | 4.08e-01 | 84.1% | 37.9% |
| 2085920 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.69 | 49.0 | 3.11e-01 | 75.4% | 15.2% |
| 3890423 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.66 | 54.0 | 3.67e-01 | 94.2% | 52.7% |
| 3222544 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 52.0 | 4.21e-01 | 92.8% | 80.8% |
| 4322557 | 192.29.1.261 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PsaN | 0.57 | 40.0 | 3.89e-01 | 75.4% | 78.8% |