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IMGVR_UViG_3300038974_000858-3300038974-Ga0416721_005573_4221_5423
Arc-VirIMGVR_UViG_3300038974_000858-3300038974-Ga0416721_005573_4221_5423
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-82
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00033__D4-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04434.23 best | SWIM | 29.4 | 6.00e-07 | 44.9% | 50.0% |
D2
high
residues 93-183
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.61 | 51.0 | 4.12e-01 | 95.6% | 86.2% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.59 | 50.0 | 4.14e-01 | 96.7% | 92.4% |
| 4z7fB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.58 | 47.0 | 3.98e-01 | 92.3% | 90.5% |
| 4huqS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.56 | 46.0 | 3.90e-01 | 92.3% | 87.8% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.54 | 46.0 | 3.85e-01 | 95.6% | 90.9% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.53 | 41.0 | 3.22e-01 | 86.8% | 88.5% |
| 2yguC00 | 1.10.238.190 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.53 | 42.0 | 3.92e-01 | 86.8% | 82.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 37.0 | 3.57e-01 | 79.1% | 91.7% |
| 2lf3A00 | 1.20.1280.220 | Mainly Alpha › Up-down Bundle › Monooxygenase › Effector protein HopAB, BAK1-interacting domain | 0.51 | 38.0 | 3.68e-01 | 80.2% | 82.9% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 40.0 | 3.12e-01 | 89.0% | 42.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940124 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.96 | 92.0 | 6.07e-01 | 98.9% | 30.0% |
| 4974444 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.92 | 78.0 | 5.36e-01 | 87.9% | 30.2% |
| 4511885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 53.0 | 6.24e-01 | 70.3% | 100.0% |
| 5035003 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.77 | 64.0 | 6.08e-01 | 89.0% | 87.6% |
| 4961908 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.75 | 56.0 | 5.93e-01 | 76.9% | 98.8% |
| 4962044 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.75 | 64.0 | 4.47e-01 | 91.2% | 33.0% |
| 5005232 | 2484.1.1.332 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 | 0.75 | 59.0 | 4.10e-01 | 84.6% | 31.1% |
| 5026084 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 62.0 | 6.15e-01 | 90.1% | 86.3% |
| 4960595 | 101.1.1.549 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_5 | 0.69 | 53.0 | 5.57e-01 | 81.3% | 97.5% |
| 5008722 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 58.0 | 4.05e-01 | 100.0% | 30.5% |
| 3651753 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.63 | 51.0 | 3.46e-01 | 91.2% | 23.9% |
| 3455559 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 50.0 | 5.02e-01 | 90.1% | 83.2% |
| 3880943 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 51.0 | 5.02e-01 | 90.1% | 83.2% |
| 3446784 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.63 | 50.0 | 3.54e-01 | 92.3% | 26.9% |
| 3901577 | 101.1.1.113 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_4 | 0.63 | 52.0 | 4.30e-01 | 90.1% | 51.2% |
| 3908710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 50.0 | 4.98e-01 | 90.1% | 84.2% |
| 3444766 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.62 | 50.0 | 4.98e-01 | 90.1% | 85.3% |
| 3442013 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.61 | 50.0 | 4.95e-01 | 91.2% | 85.3% |
| 3907483 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 48.0 | 4.56e-01 | 91.2% | 71.8% |
| 3645968 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 49.0 | 4.83e-01 | 90.1% | 84.2% |
| 3413921 | 109.4.1.496 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 | 0.60 | 48.0 | 3.04e-01 | 87.9% | 40.7% |
| 3830929 | 101.1.1.340 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF28509 | 0.59 | 47.0 | 4.10e-01 | 87.9% | 57.2% |
| 3821461 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 46.0 | 4.82e-01 | 85.7% | 98.8% |
| 3354568 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 48.0 | 4.54e-01 | 93.4% | 75.5% |
| 4943434 | 601.30.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › MMR_HSR1 | 0.57 | 42.0 | 3.61e-01 | 78.0% | 70.7% |
| 4946850 | 604.39.1.1 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM | 0.57 | 47.0 | 3.62e-01 | 93.4% | 66.2% |
| 3819780 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 46.0 | 4.49e-01 | 89.0% | 88.0% |
| 5020266 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.55 | 41.0 | 4.10e-01 | 81.3% | 75.8% |
| 3907370 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.54 | 40.0 | 2.90e-01 | 90.1% | 25.4% |
| 3713853 | 3444.2.1.1 ↗ | alpha arrays › DP domain › XPC-binding domain and DDI helical domain › XPC-binding domain › XPC-binding | 0.53 | 43.0 | 4.39e-01 | 91.2% | 100.0% |
| 3300554 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.51 | 40.0 | 2.60e-01 | 87.9% | 45.3% |
D3
high
residues 187-389
Domain cluster:
rep: KX077896.1__ANM47701.1__X__00070__D117-246_318-381
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01609.28 best | DDE_Tnp_1 | 81.6 | 9.20e-23 | 88.7% | 97.5% |