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IMGVR_UViG_3300039258_000152-3300039258-Ga0427926_008384_2453_2674

Arc-Vir

IMGVR_UViG_3300039258_000152-3300039258-Ga0427926_008384_2453_2674

Identity

Kingdom:
archaea

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 45.0 2.90e-01 77.9% 48.4%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 32.0 3.92e-01 94.1% 97.0%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 32.0 3.88e-01 94.1% 97.0%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 41.0 2.64e-01 72.1% 86.5%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 33.0 3.62e-01 75.0% 67.3%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 49.0 4.39e-01 98.5% 97.1%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 4.66e-01 98.5% 94.5%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 48.0 4.27e-01 95.6% 92.2%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.56 30.0 3.29e-01 72.1% 60.7%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 3.92e-01 97.1% 90.0%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.76e-01 91.2% 48.2%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.54 43.0 4.07e-01 91.2% 77.3%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 43.0 3.87e-01 85.3% 83.9%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.57e-01 94.1% 73.7%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.40e-01 92.6% 94.5%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 40.0 2.53e-01 89.7% 32.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3550766 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.73 36.0 4.50e-01 70.6% 80.0%
3959539 3708.1.1.0 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.68 42.0 4.64e-01 92.6% 79.2%
1033394 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 34.0 3.82e-01 92.6% 72.0%
3191760 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 47.0 3.26e-01 92.6% 64.5%
3736955 3497.1.1.0 ↗ beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain 0.59 40.0 3.26e-01 70.6% 72.0%
5072279 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 43.0 2.67e-01 95.6% 13.8%
3168083 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.58 44.0 2.79e-01 85.3% 73.1%
3509350 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.58 49.0 4.03e-01 98.5% 80.6%
3632060 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.57 40.0 2.47e-01 76.5% 60.9%
3508120 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 48.0 4.12e-01 98.5% 93.9%
3483766 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 48.0 4.29e-01 98.5% 88.0%
3518153 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 48.0 4.16e-01 98.5% 97.3%
146365 5084.7.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Hypothetical bacterial outer membrane protein (BF2706) › Hypothetical bacterial outer membrane protein (BF2706) 0.56 47.0 3.98e-01 97.1% 91.6%
3512462 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 48.0 4.05e-01 98.5% 91.7%
5069121 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 38.0 3.98e-01 72.1% 98.3%
3258821 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.56 42.0 2.65e-01 85.3% 75.9%
3922649 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.55 42.0 4.29e-01 89.7% 83.1%
3479549 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.40e-01 91.2% 44.7%
3694869 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 40.0 3.24e-01 79.4% 60.4%
222939 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.51 34.0 3.65e-01 70.6% 82.1%
4029890 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 44.0 2.86e-01 97.1% 93.1%
3260733 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.51 43.0 3.71e-01 95.6% 78.2%
3570950 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.51 42.0 3.19e-01 98.5% 55.3%