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IMGVR_UViG_3300041418_000016-3300041418-Ga0439244_0002664_19933_20133
Arc-VirIMGVR_UViG_3300041418_000016-3300041418-Ga0439244_0002664_19933_20133
Identity
- Kingdom:
- archaea
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-63
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00959.25 best | Phage_lysozyme | 42.5 | 1.10e-10 | 100.0% | 42.4% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.84 | 78.0 | 6.23e-01 | 100.0% | 54.6% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.82 | 74.0 | 5.16e-01 | 100.0% | 47.6% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.80 | 72.0 | 5.16e-01 | 100.0% | 50.0% |
| 8hp8A01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.79 | 73.0 | 5.09e-01 | 100.0% | 50.3% |
| 3snxA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 54.0 | 3.16e-01 | 92.5% | 21.8% |
| 1hskA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.64 | 53.0 | 4.12e-01 | 98.1% | 97.6% |
| 3wicA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 44.0 | 3.06e-01 | 73.6% | 95.6% |
| 1cjaA02 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.59 | 47.0 | 3.32e-01 | 90.6% | 75.7% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 53.0 | 3.41e-01 | 100.0% | 53.9% |
| 1h54A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 43.0 | 2.65e-01 | 83.0% | 16.6% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 46.0 | 3.04e-01 | 100.0% | 50.2% |
| 3kzsA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 41.0 | 2.67e-01 | 79.2% | 50.2% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.55 | 45.0 | 3.80e-01 | 90.6% | 72.7% |
| 1hp1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 42.0 | 2.68e-01 | 96.2% | 89.9% |
| 3eqvA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 41.0 | 2.89e-01 | 90.6% | 92.3% |
| 3euwA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 44.0 | 2.99e-01 | 100.0% | 95.3% |
| 3iveA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 42.0 | 2.67e-01 | 96.2% | 97.0% |
| 3clqA04 | 3.90.1700.10 | Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like | 0.50 | 42.0 | 3.03e-01 | 98.1% | 79.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944610 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.87 | 79.0 | 5.51e-01 | 100.0% | 48.4% |
| 3974990 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.84 | 77.0 | 5.95e-01 | 100.0% | 48.2% |
| 2488339 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.80 | 72.0 | 5.16e-01 | 100.0% | 50.0% |
| 3033455 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.79 | 73.0 | 5.03e-01 | 100.0% | 47.8% |
| 3589872 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 51.0 | 3.65e-01 | 79.2% | 40.7% |
| 3908091 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.65 | 36.0 | 3.91e-01 | 83.0% | 64.4% |
| 3541603 | 386.1.1.106 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-FCS | 0.62 | 34.0 | 3.67e-01 | 79.2% | 62.2% |
| 4025981 | 875.1.1.1 ↗ | a+b two layers › Chorismate synthase, AroC › Chorismate synthase, AroC › Chorismate synthase, AroC › Chorismate_synt | 0.62 | 53.0 | 3.16e-01 | 96.2% | 90.1% |
| None | — | 0.61 | 53.0 | 3.26e-01 | 100.0% | 33.7% | |
| 3540537 | 376.1.3.26 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DCR | 0.61 | 44.0 | 4.05e-01 | 81.1% | 74.7% |
| 3526185 | 377.9.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS | 0.61 | 32.0 | 3.47e-01 | 79.2% | 60.0% |
| 3170889 | 109.4.1.148 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 | 0.60 | 50.0 | 2.83e-01 | 94.3% | 21.1% |
| 3566649 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.60 | 34.0 | 3.64e-01 | 83.0% | 64.4% |
| 4955506 | 2003.1.5.444 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1156 | 0.57 | 49.0 | 2.93e-01 | 100.0% | 21.8% |
| 1562368 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.56 | 41.0 | 3.00e-01 | 79.2% | 82.9% |
| 5014775 | 1075.1.1.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 | 0.56 | 47.0 | 3.07e-01 | 100.0% | 49.5% |
| 1291820 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.56 | 45.0 | 3.00e-01 | 100.0% | 49.4% |
| 4977219 | 109.2.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_125 | 0.54 | 45.0 | 2.81e-01 | 94.3% | 42.8% |
| 3775836 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.52 | 45.0 | 3.56e-01 | 98.1% | 91.8% |
| 4277361 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.51 | 45.0 | 3.31e-01 | 100.0% | 67.1% |