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IMGVR_UViG_3300041485_000001-3300041485-Ga0453632_013_13775_13936

Arc-Vir

IMGVR_UViG_3300041485_000001-3300041485-Ga0453632_013_13775_13936

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jiuA00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.79 70.0 5.47e-01 98.0% 59.0%
4wz9A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.76 68.0 4.28e-01 100.0% 38.6%
6rqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.76 68.0 4.31e-01 100.0% 41.1%
4fcaA02 3.40.390.80 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Peptidase M60, enhancin-like domain 2 0.74 65.0 4.81e-01 100.0% 72.6%
4kx7A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.74 65.0 4.16e-01 100.0% 40.6%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.74 64.0 5.13e-01 100.0% 60.6%
1h19A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.74 66.0 5.29e-01 100.0% 90.7%
1eb6A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.73 65.0 4.45e-01 100.0% 73.4%
2yptA02 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.67 56.0 4.93e-01 100.0% 87.7%
4k2hD00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.65 51.0 3.51e-01 88.2% 89.2%
3cyfA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.64 49.0 3.42e-01 88.2% 90.3%
3b34A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.64 48.0 4.12e-01 82.4% 97.6%
3ewnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.64 50.0 3.22e-01 88.2% 69.0%
3f5dA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.63 53.0 3.63e-01 98.0% 81.9%
4kmaA02 3.30.1360.230 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain 0.63 49.0 3.76e-01 86.3% 64.7%
3er6A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.62 51.0 3.55e-01 98.0% 88.5%
4hcjA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 51.0 3.63e-01 98.0% 92.5%
6p8iA04 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.61 45.0 3.56e-01 80.4% 40.4%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 31.0 2.72e-01 98.0% 30.4%
3fseA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 50.0 3.43e-01 98.0% 82.2%
8a3pA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 49.0 3.42e-01 98.0% 97.4%
2vrnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 49.0 3.42e-01 98.0% 89.7%
4xllA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 49.0 3.42e-01 98.0% 87.5%
4bl8B03 3.30.1360.230 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain 0.59 46.0 3.52e-01 90.2% 87.9%
3bhnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 48.0 3.27e-01 98.0% 74.2%
3cneA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.57 47.0 3.39e-01 98.0% 96.6%
1f6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 2.94e-01 80.4% 34.4%
1bccA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 48.0 3.20e-01 100.0% 94.4%
3f2bA08 1.10.150.870 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 39.0 3.07e-01 80.4% 55.5%
3p9dD02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.55 42.0 3.50e-01 90.2% 45.7%
1rjgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 2.71e-01 90.2% 31.3%
1ztmA01 2.40.490.10 Mainly Beta › Beta Barrel › Head and neck region of the ectodomain of NDV fusion glycoprotein › Newcastle disease virus like domain 0.55 34.0 2.74e-01 100.0% 29.6%
1e8cA01 3.40.1390.10 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain 0.54 40.0 3.27e-01 82.4% 80.2%
1qxnA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.54 39.0 2.93e-01 78.4% 30.7%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.54 39.0 2.54e-01 80.4% 26.9%
1pjcA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 35.0 2.61e-01 82.4% 93.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230825 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.78 69.0 4.35e-01 100.0% 39.6%
4937226 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.77 70.0 4.36e-01 100.0% 31.9%
5004191 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 66.0 4.35e-01 98.0% 28.6%
4194668 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 68.0 5.33e-01 100.0% 74.3%
4967994 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 68.0 5.57e-01 100.0% 68.9%
5036683 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.75 64.0 4.80e-01 98.0% 53.1%
3970171 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.74 64.0 5.08e-01 98.0% 63.8%
3997363 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.74 65.0 3.91e-01 100.0% 21.7%
4033720 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.74 62.0 4.36e-01 94.1% 30.6%
3483369 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.74 66.0 4.07e-01 100.0% 29.2%
3860717 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.74 66.0 4.08e-01 100.0% 27.6%
3824711 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.74 65.0 4.06e-01 100.0% 35.0%
1030677 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 64.0 5.01e-01 100.0% 56.2%
5027859 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 64.0 4.70e-01 100.0% 60.9%
5069411 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 64.0 4.15e-01 100.0% 32.8%
3415343 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.73 64.0 4.06e-01 100.0% 33.5%
3546292 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.73 65.0 3.96e-01 100.0% 41.5%
3413735 3435.1.1.6 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF155 0.71 56.0 4.01e-01 88.2% 98.7%
4986205 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 59.0 4.00e-01 100.0% 33.8%
4954771 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 57.0 4.08e-01 100.0% 43.5%
3887886 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.68 59.0 3.79e-01 100.0% 56.7%
5044595 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 58.0 4.02e-01 100.0% 42.8%
4952523 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 58.0 3.75e-01 98.0% 20.4%
3209971 604.1.1.135 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.65 55.0 3.47e-01 100.0% 44.7%
1952631 2498.1.1.41 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60 0.65 55.0 3.39e-01 100.0% 31.0%
3824569 2007.1.1.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.64 50.0 3.44e-01 90.2% 95.5%
5045375 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.63 54.0 3.55e-01 100.0% 35.3%
350048 2007.1.1.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.62 52.0 3.65e-01 98.0% 91.8%
4392683 7501.1.1.1 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.62 47.0 3.35e-01 86.3% 36.4%
4959341 2008.1.1.152 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.60 52.0 3.92e-01 98.0% 54.4%
3203855 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.59 44.0 2.67e-01 80.4% 11.2%
3180442 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.59 45.0 2.72e-01 84.3% 21.9%
3601536 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 50.0 3.57e-01 100.0% 50.9%
3463451 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.58 47.0 2.90e-01 94.1% 33.3%
4947514 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 46.0 3.03e-01 96.1% 31.9%
3165290 7529.1.1.12 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF3663 0.58 45.0 3.73e-01 90.2% 54.0%
3458541 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.58 48.0 2.94e-01 96.1% 37.6%
3838900 2008.1.1.152 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.57 49.0 3.53e-01 98.0% 54.8%
3821238 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.57 47.0 2.91e-01 96.1% 36.6%
3827379 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.57 47.0 2.84e-01 96.1% 31.8%
4997909 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.56 42.0 2.91e-01 84.3% 28.7%
4013028 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.56 40.0 3.25e-01 80.4% 39.1%
4963595 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.56 44.0 3.19e-01 92.2% 49.4%
3390173 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.55 41.0 2.49e-01 80.4% 21.4%
3176188 109.4.1.3157 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29174, PF29177 0.54 42.0 2.60e-01 90.2% 32.2%
4957803 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 43.0 2.87e-01 90.2% 51.3%
4948463 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 41.0 2.81e-01 84.3% 40.9%
3944717 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.71e-01 88.2% 22.0%
4948399 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 41.0 2.81e-01 90.2% 42.1%
4958354 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 41.0 2.82e-01 88.2% 55.4%
4987840 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 42.0 2.90e-01 92.2% 45.0%
4814344 2004.1.1.134 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Podovirus_Gp16 0.52 36.0 2.46e-01 74.5% 86.9%
4992751 2002.3.1.0 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase 0.51 40.0 2.67e-01 94.1% 83.1%
4949615 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 42.0 3.03e-01 98.0% 49.7%
5072777 2007.1.1.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.51 40.0 2.96e-01 100.0% 88.5%
3494153 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.51 37.0 2.59e-01 80.4% 26.5%
3470915 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.51 37.0 2.34e-01 80.4% 16.1%
4967919 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.51 43.0 3.17e-01 100.0% 42.0%
3763416 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.51 36.0 2.25e-01 80.4% 19.5%
4310791 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.51 36.0 2.27e-01 80.4% 20.8%
3919163 2003.1.5.119 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_22 0.50 37.0 2.53e-01 86.3% 31.7%