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IMGVR_UViG_3300042094_000557-3300042094-Ga0453242_005735_1_210
Arc-VirIMGVR_UViG_3300042094_000557-3300042094-Ga0453242_005735_1_210
Identity
- Kingdom:
- archaea
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-64
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04308.19 best | RNaseH_like | 35.8 | 9.90e-09 | 100.0% | 30.3% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.71 | 61.0 | 4.11e-01 | 96.9% | 58.4% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 57.0 | 4.57e-01 | 98.4% | 77.3% |
| 4y9tA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 46.0 | 3.54e-01 | 75.0% | 52.4% |
| 2f62A00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 47.0 | 3.53e-01 | 78.1% | 55.1% |
| 5dn8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 51.0 | 3.88e-01 | 90.6% | 39.3% |
| 6qrjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 43.0 | 3.52e-01 | 70.3% | 57.4% |
| 7ch9L01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.62 | 42.0 | 3.81e-01 | 87.5% | 51.7% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.62 | 53.0 | 4.31e-01 | 100.0% | 79.1% |
| 2cvbA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 52.0 | 3.84e-01 | 100.0% | 34.2% |
| 4c5cA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 44.0 | 4.07e-01 | 76.6% | 98.8% |
| 3kwlA03 | 1.20.1050.140 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 43.0 | 3.26e-01 | 75.0% | 55.9% |
| 6h4dA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 49.0 | 3.88e-01 | 98.4% | 56.6% |
| 3bvpB00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.60 | 42.0 | 3.38e-01 | 87.5% | 36.9% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 44.0 | 3.85e-01 | 82.8% | 51.0% |
| 1jbwA02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.59 | 51.0 | 4.29e-01 | 100.0% | 72.3% |
| 2c2xA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.58 | 49.0 | 3.84e-01 | 98.4% | 67.5% |
| 2xvyA01 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 46.0 | 3.64e-01 | 90.6% | 49.3% |
| 1fy2A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.57 | 48.0 | 3.39e-01 | 100.0% | 39.5% |
| 1gcaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 48.0 | 3.68e-01 | 100.0% | 59.6% |
| 7jt8I02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.56 | 47.0 | 3.76e-01 | 98.4% | 84.0% |
| 6znjB01 | 3.40.50.10950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 46.0 | 3.67e-01 | 98.4% | 97.3% |
| 1np7B01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 47.0 | 3.79e-01 | 100.0% | 73.7% |
| 4xxhA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 46.0 | 3.92e-01 | 100.0% | 82.9% |
| 4fe7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 46.0 | 3.69e-01 | 100.0% | 73.3% |
| 4wutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 47.0 | 3.67e-01 | 100.0% | 54.6% |
| 1zh8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 45.0 | 3.49e-01 | 90.6% | 49.7% |
| 1b1cA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.55 | 43.0 | 3.30e-01 | 90.6% | 83.1% |
| 2es7A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 37.0 | 3.27e-01 | 75.0% | 45.6% |
| 1np6B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 3.04e-01 | 75.0% | 73.5% |
| 4n9wA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 42.0 | 3.10e-01 | 89.1% | 63.4% |
| 3kljA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 3.90e-01 | 100.0% | 62.7% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 3.21e-01 | 92.2% | 99.4% |
| 3cgbA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 3.50e-01 | 100.0% | 52.3% |
| 3lzdA03 | 3.40.50.11860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 3 | 0.52 | 44.0 | 3.84e-01 | 98.4% | 79.4% |
| 3i1iB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 2.64e-01 | 92.2% | 18.1% |
| 4gi5A00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 43.0 | 2.94e-01 | 98.4% | 80.7% |
| 1b93B00 | 3.40.50.1380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain | 0.51 | 38.0 | 2.98e-01 | 82.8% | 78.1% |
| 3lloA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.51 | 40.0 | 3.24e-01 | 87.5% | 69.7% |
| 2r9zA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 43.0 | 3.63e-01 | 100.0% | 66.1% |
| 3rc3A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 44.0 | 3.40e-01 | 100.0% | 77.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593046 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 52.0 | 4.01e-01 | 92.2% | 38.7% |
| 5030276 | 2485.1.1.31 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin | 0.64 | 54.0 | 3.97e-01 | 100.0% | 34.6% |
| 4953095 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.64 | 44.0 | 3.22e-01 | 73.4% | 55.1% |
| 3351284 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.63 | 54.0 | 3.94e-01 | 100.0% | 34.2% |
| 3207949 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.63 | 50.0 | 3.57e-01 | 96.9% | 27.6% |
| 3175891 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.62 | 50.0 | 4.00e-01 | 90.6% | 54.6% |
| 4023546 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 39.0 | 3.37e-01 | 87.5% | 44.0% |
| 3174160 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.57 | 40.0 | 3.80e-01 | 90.6% | 62.7% |
| 5074713 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.57 | 46.0 | 3.47e-01 | 93.8% | 74.9% |
| 4985417 | 2007.2.3.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 | 0.56 | 49.0 | 3.95e-01 | 100.0% | 73.1% |
| 3410655 | 2004.1.1.222 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RhoGAP_pG1_pG2 | 0.56 | 46.0 | 3.47e-01 | 90.6% | 41.2% |
| 3712837 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 45.0 | 3.26e-01 | 92.2% | 36.0% |
| 3983802 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 38.0 | 3.44e-01 | 87.5% | 50.0% |
| 4112050 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.56 | 47.0 | 3.63e-01 | 100.0% | 58.8% |
| 3360324 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.56 | 45.0 | 3.71e-01 | 95.3% | 60.0% |
| 4932715 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.56 | 43.0 | 3.51e-01 | 89.1% | 42.2% |
| 4855248 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 40.0 | 3.45e-01 | 87.5% | 47.2% |
| 3508094 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 46.0 | 2.88e-01 | 100.0% | 83.6% |
| 4939572 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 43.0 | 2.64e-01 | 92.2% | 19.6% |
| 4404968 | 7512.1.1.9 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB | 0.54 | 45.0 | 3.27e-01 | 100.0% | 38.6% |
| 4335045 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 43.0 | 3.73e-01 | 90.6% | 62.9% |
| 5061012 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.54 | 42.0 | 3.11e-01 | 89.1% | 56.3% |
| 4017183 | 2004.1.1.303 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC2_membrane_7 | 0.54 | 36.0 | 2.24e-01 | 87.5% | 10.1% |
| 4022822 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 3.51e-01 | 100.0% | 62.4% |
| 5063562 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.53 | 46.0 | 3.95e-01 | 98.4% | 75.2% |
| 5030602 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.53 | 46.0 | 3.78e-01 | 98.4% | 58.8% |
| 4941067 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.52 | 45.0 | 3.93e-01 | 98.4% | 81.0% |
| 4935149 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.52 | 45.0 | 3.77e-01 | 98.4% | 67.0% |
| 4862640 | 2006.1.1.16 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_like,Hydrolase_6 | 0.51 | 40.0 | 3.63e-01 | 89.1% | 82.4% |
| 5031232 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 34.0 | 2.75e-01 | 87.5% | 32.1% |