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IMGVR_UViG_3300042097_000049-3300042097-Ga0453246_000192_5648_5893

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300042097_000049-3300042097-Ga0453246_000192_5648_5893 ↗
Kingdom:: archaea

Quality

71.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-80

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4akgA06	1.10.8.710	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain	0.65	57.0	4.62e-01	100.0%	93.5%
3d1uA03	1.20.1270.240	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.62	46.0	3.83e-01	80.4%	83.2%
1urfA00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.61	40.0	3.50e-01	85.7%	46.9%
7tj4A01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.60	44.0	3.44e-01	78.6%	52.5%
3n5lA03	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	42.0	4.26e-01	91.1%	77.2%
3gwnA00	1.20.120.310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain	0.55	45.0	3.76e-01	100.0%	52.2%
5haxA01	1.20.58.1780	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	43.0	2.89e-01	92.9%	50.2%
3s64A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.52	42.0	3.89e-01	100.0%	70.4%
3d8lA00	1.10.8.940	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12	0.52	44.0	3.85e-01	100.0%	81.3%
1zoyD00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.51	41.0	3.35e-01	85.7%	54.9%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5016721	6132.1.1.14 ↗	alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › PF29261	0.72	51.0	4.99e-01	75.0%	71.7%
3806243	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.68	56.0	3.79e-01	85.7%	27.2%
3309615	4156.1.1.2 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C	0.68	55.0	3.45e-01	85.7%	19.2%
3457832	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.63	49.0	3.38e-01	85.7%	41.0%
3741080	2485.1.1.1 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin	0.63	53.0	3.73e-01	100.0%	30.0%
5031107	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.57	52.0	3.84e-01	100.0%	42.2%
4967343	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.57	50.0	3.43e-01	98.2%	72.3%
3877230	109.4.1.2031 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, ANAPC3, TPR_8	0.56	46.0	2.98e-01	96.4%	40.0%
3359280	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.54	46.0	3.26e-01	100.0%	57.9%
3601478	3978.1.1.0 ↗	alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase	0.53	44.0	2.81e-01	96.4%	62.9%
1165137	109.2.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid	0.50	41.0	3.04e-01	92.9%	38.4%