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IMGVR_UViG_3300042101_000503-3300042101-Ga0453250_002817_2_418

Arc-Vir

IMGVR_UViG_3300042101_000503-3300042101-Ga0453250_002817_2_418

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.91 85.0 5.60e-01 100.0% 92.9%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.90 80.0 6.11e-01 96.2% 81.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.88 80.0 6.04e-01 100.0% 82.9%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.88 79.0 6.09e-01 98.1% 82.6%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.85 76.0 5.99e-01 100.0% 61.3%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.85 74.0 5.27e-01 100.0% 33.6%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.85 60.0 4.23e-01 75.0% 27.0%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.82 72.0 6.69e-01 92.3% 90.3%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.82 71.0 6.14e-01 94.2% 85.9%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.82 71.0 6.23e-01 100.0% 67.1%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.82 73.0 5.82e-01 98.1% 80.6%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.81 71.0 5.53e-01 100.0% 69.0%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.81 71.0 6.06e-01 100.0% 83.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.81 71.0 6.20e-01 100.0% 87.3%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 71.0 6.22e-01 100.0% 77.2%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.81 73.0 5.52e-01 98.1% 76.3%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.80 73.0 5.75e-01 100.0% 85.0%
4kp3C00 1.20.58.1770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 61.0 5.25e-01 84.6% 60.5%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.78 67.0 6.08e-01 100.0% 72.6%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.77 61.0 3.69e-01 86.5% 21.1%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.77 69.0 5.38e-01 100.0% 75.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.77 54.0 5.05e-01 75.0% 60.0%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.76 66.0 5.46e-01 100.0% 54.7%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 65.0 5.26e-01 100.0% 91.2%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 65.0 5.39e-01 100.0% 93.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 5.74e-01 100.0% 94.5%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.74 61.0 4.64e-01 100.0% 39.9%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.73 61.0 4.54e-01 92.3% 52.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.73 65.0 5.68e-01 100.0% 87.2%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 65.0 4.66e-01 100.0% 53.5%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 51.0 4.95e-01 75.0% 74.1%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.72 62.0 5.11e-01 100.0% 93.8%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.71 57.0 4.58e-01 96.2% 80.0%
1he8A03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.71 59.0 4.76e-01 100.0% 54.1%
2pqrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 61.0 5.10e-01 100.0% 57.0%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 61.0 5.38e-01 98.1% 80.3%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 49.0 4.55e-01 75.0% 60.9%
4u2vA02 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.70 57.0 5.03e-01 94.2% 65.0%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.69 57.0 3.95e-01 94.2% 73.8%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 57.0 4.22e-01 94.2% 50.4%
1h97A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 58.0 4.17e-01 94.2% 49.0%
1dm1A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 56.0 4.06e-01 92.3% 49.3%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 57.0 4.55e-01 100.0% 56.6%
6dv2G02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 58.0 4.01e-01 98.1% 28.3%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.67 52.0 5.13e-01 84.6% 78.6%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 51.0 3.44e-01 82.7% 93.7%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 56.0 4.53e-01 100.0% 84.5%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 57.0 5.14e-01 98.1% 87.8%
2radA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.66 56.0 4.32e-01 100.0% 60.6%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.66 52.0 3.93e-01 86.5% 64.5%
4g1tA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 57.0 3.70e-01 98.1% 25.2%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.66 56.0 4.09e-01 100.0% 66.0%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 47.0 4.23e-01 82.7% 54.4%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.64 48.0 3.39e-01 84.6% 63.9%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 45.0 4.61e-01 75.0% 78.0%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.62 52.0 4.73e-01 94.2% 71.8%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 49.0 3.93e-01 92.3% 53.0%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 52.0 4.03e-01 100.0% 89.8%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 54.0 3.64e-01 100.0% 42.6%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.62 48.0 3.81e-01 94.2% 91.2%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 4.41e-01 100.0% 85.9%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 44.0 3.51e-01 78.8% 38.4%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.61 47.0 3.89e-01 92.3% 71.0%
1bccB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 49.0 3.44e-01 96.2% 69.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 52.0 3.81e-01 100.0% 90.6%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 48.0 3.65e-01 94.2% 51.1%
3bh1A02 1.20.1570.10 Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like 0.60 50.0 4.13e-01 98.1% 75.2%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 49.0 3.79e-01 100.0% 56.8%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.56 46.0 4.11e-01 98.1% 69.1%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975674 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.91 83.0 6.31e-01 100.0% 46.4%
4828003 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.91 82.0 6.07e-01 98.1% 79.3%
3314941 109.4.1.1293 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.91 83.0 5.70e-01 100.0% 33.8%
4137468 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.90 80.0 5.32e-01 98.1% 89.2%
5045348 604.34.1.0 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase 0.89 82.0 6.82e-01 100.0% 69.4%
4447311 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.89 79.0 5.30e-01 98.1% 91.7%
5029911 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.89 81.0 7.79e-01 100.0% 96.6%
4071991 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.88 82.0 5.40e-01 100.0% 89.2%
1036846 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.87 77.0 5.79e-01 98.1% 77.5%
4460268 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.86 77.0 5.16e-01 100.0% 87.4%
2889550 4995.1.1.0 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.86 74.0 6.18e-01 92.3% 82.1%
3415759 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.85 78.0 6.53e-01 100.0% 83.5%
3199287 109.4.1.297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EMC2 0.84 74.0 4.76e-01 98.1% 22.2%
3737325 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.84 75.0 5.28e-01 100.0% 33.5%
4147954 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.84 76.0 6.24e-01 100.0% 67.8%
4984709 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.83 72.0 6.09e-01 92.3% 83.7%
5076363 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.83 73.0 6.11e-01 96.2% 74.1%
3279151 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.83 76.0 6.14e-01 98.1% 73.3%
1261672 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.82 73.0 6.05e-01 100.0% 77.2%
3475614 186.2.1.1 alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.82 73.0 5.42e-01 100.0% 43.1%
4306757 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.82 73.0 5.79e-01 100.0% 66.7%
5004518 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.82 73.0 6.33e-01 96.2% 84.0%
4033902 4146.1.1.1 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.82 73.0 6.88e-01 94.2% 91.7%
4944710 604.5.1.82 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TrkA_C 0.82 75.0 6.02e-01 100.0% 85.3%
3237959 109.4.1.661 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT11 0.81 72.0 4.23e-01 100.0% 13.3%
4095580 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.81 72.0 5.85e-01 100.0% 64.2%
3661 633.10.1.1 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.81 73.0 5.53e-01 98.1% 77.0%
4048456 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.80 71.0 5.93e-01 100.0% 67.8%
4061821 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.80 72.0 6.19e-01 100.0% 70.0%
54292 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.80 71.0 5.43e-01 98.1% 77.4%
4983539 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.79 72.0 4.51e-01 100.0% 75.8%
4090365 316.1.1.9 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GlnE 0.79 69.0 4.47e-01 98.1% 30.2%
5018283 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.79 71.0 5.68e-01 100.0% 68.0%
4565836 4146.1.1.1 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.79 70.0 6.27e-01 96.2% 78.6%
3660 633.10.1.1 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.78 71.0 5.41e-01 100.0% 73.5%
2643652 640.1.1.1 alpha arrays › Methane monooxygenase hydrolase gamma subunit-like › Methane monooxygenase hydrolase gamma subunit › Methane monooxygenase hydrolase gamma subunit › MeMO_Hyd_G 0.78 67.0 4.69e-01 100.0% 31.5%
4998720 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.77 71.0 4.38e-01 100.0% 73.7%
4001252 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 67.0 4.08e-01 100.0% 16.5%
3613271 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 66.0 4.88e-01 94.2% 40.8%
3988856 4146.1.1.1 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.77 68.0 6.01e-01 96.2% 82.4%
54287 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.77 69.0 5.28e-01 100.0% 75.7%
None 0.76 64.0 4.01e-01 100.0% 17.4%
5045529 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 65.0 6.16e-01 100.0% 96.9%
4001046 109.4.1.342 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SBF2 0.76 66.0 4.13e-01 100.0% 21.0%
5079293 1030.1.1.0 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.76 68.0 5.09e-01 100.0% 43.2%
3644211 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.75 60.0 3.75e-01 94.2% 16.2%
4992431 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.75 63.0 4.75e-01 96.2% 39.2%
3530124 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.75 62.0 5.56e-01 100.0% 65.0%
3631840 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 63.0 4.72e-01 94.2% 47.2%
4258322 5086.1.1.189 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB 0.74 53.0 4.86e-01 76.9% 57.1%
3974625 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.74 54.0 4.93e-01 78.8% 58.6%
4009031 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 54.0 4.57e-01 78.8% 48.2%
3714315 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 63.0 5.09e-01 100.0% 75.2%
3486313 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.72 58.0 4.99e-01 90.4% 63.5%
3739640 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.72 57.0 4.56e-01 90.4% 52.7%
3917090 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.72 61.0 4.63e-01 100.0% 68.9%
3260138 109.4.1.89 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3,Drf_GBD 0.71 61.0 3.72e-01 100.0% 15.1%
3360842 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.71 55.0 5.16e-01 84.6% 80.0%
4124807 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.71 61.0 5.08e-01 96.2% 78.9%
3970512 5086.1.1.189 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB 0.71 50.0 4.53e-01 76.9% 53.3%
4545071 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.71 61.0 4.99e-01 96.2% 74.7%
4955174 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.70 59.0 4.33e-01 94.2% 48.6%
3737576 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.70 55.0 4.37e-01 86.5% 48.6%
4323909 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 60.0 4.90e-01 96.2% 70.5%
4168740 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.70 58.0 4.05e-01 96.2% 28.9%
3274546 7516.1.1.79 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.70 62.0 3.51e-01 100.0% 92.5%
3681244 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 59.0 3.67e-01 100.0% 23.1%
3902786 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 60.0 5.06e-01 98.1% 72.7%
3275 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.69 57.0 4.21e-01 94.2% 50.0%
4556484 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 58.0 4.52e-01 100.0% 72.0%
3624122 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 52.0 3.60e-01 84.6% 35.6%
3710910 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 56.0 3.63e-01 100.0% 33.0%
3822956 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 57.0 5.38e-01 100.0% 86.2%
5048577 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.60 47.0 4.35e-01 100.0% 88.7%
3606082 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.59 48.0 4.17e-01 100.0% 68.9%
5044361 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.57 45.0 3.03e-01 100.0% 88.1%
3817864 7016.1.1.0 extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain 0.56 47.0 3.63e-01 100.0% 77.8%
3570983 6103.1.1.1 alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › DAXX_hist_bd 0.53 42.0 2.95e-01 96.2% 26.2%
D2 high residues 67-126
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.81 71.0 5.22e-01 100.0% 46.6%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 65.0 6.15e-01 100.0% 93.1%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.71 50.0 4.87e-01 85.0% 67.6%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.06e-01 100.0% 49.0%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 37.0 3.82e-01 70.0% 63.2%
1jnrA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.61 54.0 4.30e-01 100.0% 71.1%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.60 47.0 4.33e-01 91.7% 70.6%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 40.0 3.71e-01 73.3% 57.0%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 48.0 3.86e-01 100.0% 88.8%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 50.0 3.88e-01 96.7% 72.4%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 43.0 4.17e-01 81.7% 72.9%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 50.0 3.98e-01 96.7% 76.9%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 49.0 3.80e-01 96.7% 69.2%
1n00A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.56 44.0 4.21e-01 100.0% 75.3%
3qdnA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 41.0 3.73e-01 100.0% 58.3%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.55 44.0 3.34e-01 95.0% 53.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.54 44.0 4.09e-01 91.7% 87.0%
1rsoB00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.52 36.0 3.74e-01 73.3% 80.4%
3i83A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 40.0 3.27e-01 93.3% 59.4%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 44.0 3.32e-01 96.7% 84.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975820 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.98 77.0 7.79e-01 81.7% 81.7%
5061090 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.96 74.0 6.94e-01 80.0% 68.6%
3809136 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.93 81.0 7.87e-01 98.3% 84.6%
3571858 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.93 71.0 5.32e-01 80.0% 36.9%
3711112 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.92 80.0 5.84e-01 93.3% 38.6%
5060063 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.91 83.0 7.81e-01 100.0% 82.9%
3726347 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.90 83.0 5.82e-01 98.3% 49.7%
3362789 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.90 78.0 6.47e-01 95.0% 56.0%
3895896 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.90 78.0 5.76e-01 93.3% 40.0%
3628782 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.89 71.0 5.27e-01 86.7% 36.4%
3834278 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.89 78.0 7.56e-01 93.3% 87.7%
3806415 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.88 81.0 6.38e-01 100.0% 72.2%
4021909 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.88 79.0 5.84e-01 98.3% 53.1%
3308780 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.87 81.0 5.58e-01 100.0% 46.1%
3927989 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.87 82.0 6.99e-01 100.0% 76.7%
3844081 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.87 81.0 6.82e-01 100.0% 86.3%
3814803 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.87 78.0 6.97e-01 95.0% 73.8%
3665479 109.29.1.1 alpha superhelices › Repetitive alpha hairpins › Chloroplast inner membrane protein TIC110 › Chloroplast inner membrane protein TIC110 › Tic110 0.87 79.0 4.56e-01 100.0% 15.9%
3668677 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.87 77.0 7.28e-01 95.0% 82.9%
3362792 4982.1.1.3 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › Tic110 0.87 80.0 5.63e-01 100.0% 48.8%
3723313 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.87 69.0 4.98e-01 85.0% 46.5%
3441766 109.4.1.1559 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 0.87 80.0 5.04e-01 100.0% 29.1%
5061858 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.87 78.0 5.65e-01 98.3% 45.2%
3611539 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.86 73.0 5.06e-01 93.3% 30.3%
3251818 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.85 71.0 6.94e-01 100.0% 81.5%
3701004 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.85 75.0 6.62e-01 95.0% 70.6%
3830185 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.85 75.0 7.53e-01 93.3% 95.0%
3666716 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.84 76.0 6.83e-01 96.7% 72.5%
5067468 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.84 73.0 7.14e-01 100.0% 86.2%
3806413 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.82 68.0 5.04e-01 93.3% 36.1%
3345966 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.81 68.0 6.37e-01 95.0% 74.7%
5061410 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.81 73.0 6.98e-01 100.0% 85.7%
3378555 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.80 72.0 4.99e-01 98.3% 50.3%
3906253 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.76 64.0 5.11e-01 93.3% 86.7%
5075048 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.72 59.0 4.71e-01 93.3% 44.0%
5074258 608.1.1.0 alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.72 58.0 5.67e-01 93.3% 83.1%
3839590 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.71 54.0 5.06e-01 85.0% 72.0%
4107154 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.70 51.0 5.07e-01 81.7% 80.0%
4967913 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 45.0 4.07e-01 73.3% 48.2%
3926730 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 56.0 4.69e-01 93.3% 84.8%
3416310 142.1.1.5 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.65 45.0 4.24e-01 73.3% 60.0%
4482310 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.65 50.0 5.14e-01 90.0% 90.9%
5064030 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.62 53.0 4.55e-01 100.0% 60.0%
134979 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.57 43.0 4.13e-01 83.3% 71.2%
3500138 564.1.1.0 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.56 44.0 4.49e-01 88.3% 91.7%
4046400 150.1.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.56 46.0 3.51e-01 95.0% 52.3%