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IMGVR_UViG_3300042101_000506-3300042101-Ga0453250_008323_1433_1987

Arc-Vir

IMGVR_UViG_3300042101_000506-3300042101-Ga0453250_008323_1433_1987

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-41
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.95 88.0 7.50e-01 100.0% 69.4%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.94 85.0 7.27e-01 100.0% 69.8%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.94 86.0 5.65e-01 100.0% 28.0%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.93 84.0 6.68e-01 100.0% 52.6%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.93 85.0 7.42e-01 100.0% 69.5%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.93 85.0 7.83e-01 100.0% 88.2%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.93 85.0 5.56e-01 100.0% 27.5%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.92 80.0 5.30e-01 95.1% 37.5%
3o2tA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.92 77.0 4.47e-01 90.2% 12.5%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.91 81.0 7.05e-01 100.0% 72.6%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.91 82.0 5.02e-01 100.0% 19.6%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.90 73.0 6.00e-01 95.1% 51.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.90 80.0 6.85e-01 100.0% 68.8%
1z6tA05 1.25.40.370 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.89 73.0 4.98e-01 95.1% 27.2%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.89 79.0 6.16e-01 100.0% 54.1%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.89 79.0 6.96e-01 100.0% 89.8%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.88 77.0 4.79e-01 100.0% 19.4%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.88 67.0 4.53e-01 100.0% 24.6%
2lf0A01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.87 77.0 6.75e-01 100.0% 75.0%
1rtwB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.86 73.0 4.63e-01 100.0% 19.7%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.85 68.0 6.37e-01 87.8% 78.0%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 72.0 5.74e-01 97.6% 49.4%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 72.0 5.89e-01 100.0% 52.6%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 57.0 4.91e-01 70.7% 75.4%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.82 70.0 4.30e-01 97.6% 17.8%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.82 65.0 5.28e-01 90.2% 49.4%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.81 69.0 5.12e-01 100.0% 41.7%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.81 73.0 4.97e-01 100.0% 53.7%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 64.0 4.78e-01 90.2% 37.3%
2xkoC02 6.10.250.870 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 57.0 5.84e-01 80.5% 100.0%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.78 66.0 4.92e-01 100.0% 40.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 66.0 5.94e-01 100.0% 78.3%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.78 67.0 4.86e-01 100.0% 35.7%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.77 64.0 5.40e-01 100.0% 61.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 4.70e-01 100.0% 37.9%
2j4bB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.76 62.0 4.46e-01 100.0% 56.4%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.75 62.0 5.06e-01 100.0% 51.2%
3l3sA02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 54.0 5.60e-01 80.5% 94.4%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.74 64.0 6.19e-01 100.0% 100.0%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 60.0 5.35e-01 100.0% 64.1%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 55.0 4.97e-01 95.1% 61.9%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 59.0 5.22e-01 100.0% 72.1%
2vx2G02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.68 55.0 5.21e-01 100.0% 80.0%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 56.0 5.32e-01 97.6% 82.0%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.65 53.0 4.74e-01 100.0% 68.3%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.64 46.0 3.53e-01 80.5% 36.8%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 51.0 3.43e-01 100.0% 21.0%
4qfeK02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 4.23e-01 82.9% 97.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3336158 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.99 93.0 6.03e-01 100.0% 27.7%
3614667 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.98 92.0 5.19e-01 100.0% 11.9%
3715996 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.98 91.0 8.43e-01 100.0% 82.0%
3512620 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.98 91.0 5.83e-01 100.0% 25.6%
5055943 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.97 91.0 6.55e-01 100.0% 41.0%
4647178 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.97 90.0 5.15e-01 100.0% 12.8%
3466539 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.97 90.0 7.30e-01 100.0% 58.6%
3574797 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.97 87.0 6.78e-01 97.6% 50.0%
3476130 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.97 89.0 5.93e-01 100.0% 29.3%
3916832 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.96 90.0 6.24e-01 100.0% 35.7%
3698212 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.96 90.0 5.09e-01 100.0% 11.9%
3498656 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.96 89.0 6.66e-01 100.0% 45.6%
4951184 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.96 89.0 8.27e-01 100.0% 82.0%
4941665 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.96 88.0 7.24e-01 100.0% 59.4%
5012084 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.96 89.0 5.39e-01 100.0% 18.2%
3788338 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.96 88.0 7.05e-01 100.0% 55.4%
4405928 5086.1.1.196 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX 0.96 88.0 7.18e-01 100.0% 58.6%
3200543 109.4.1.368 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SHNi-TPR 0.96 88.0 4.93e-01 100.0% 10.4%
3288130 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.95 87.0 7.71e-01 97.6% 72.7%
4949374 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.93 85.0 7.14e-01 100.0% 63.1%
148414 605.4.1.2 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC 0.92 83.0 7.79e-01 100.0% 83.7%
4336724 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.91 82.0 5.89e-01 100.0% 37.3%
3596786 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.91 82.0 4.62e-01 100.0% 9.5%
3595146 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.90 81.0 7.84e-01 100.0% 91.1%
1172174 221.8.1.2 a+b two layers › beta-Grasp › GfcC › GfcC › Caps_syn_GfcC_N 0.90 72.0 5.00e-01 95.1% 28.8%
3349325 5086.1.1.135 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7615 0.90 79.0 6.30e-01 100.0% 51.2%
1821875 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.90 80.0 7.06e-01 100.0% 71.2%
4475138 606.1.1.16 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Transposase_20 0.90 78.0 4.93e-01 100.0% 20.5%
3927560 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.89 79.0 6.96e-01 100.0% 91.7%
4461237 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.89 80.0 4.40e-01 100.0% 26.4%
3908132 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.89 78.0 4.72e-01 100.0% 16.1%
5070891 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.88 77.0 6.18e-01 100.0% 51.2%
3959009 601.48.1.0 alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.88 72.0 6.12e-01 90.2% 56.9%
4039014 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.87 76.0 5.55e-01 100.0% 37.3%
4671 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.87 75.0 5.49e-01 100.0% 37.3%
3942719 4053.1.1.0 a+b complex topology › Insertion domain in replication terminator protein (Tus) › Insertion domain in replication terminator protein (Tus) › Insertion domain in replication terminator protein (Tus) 0.87 74.0 6.65e-01 92.7% 69.1%
4026159 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.87 74.0 7.04e-01 100.0% 82.0%
3737750 109.4.1.255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_22 0.86 79.0 5.16e-01 100.0% 32.3%
3250840 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.86 74.0 6.03e-01 100.0% 51.9%
3286299 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.86 73.0 5.40e-01 100.0% 37.3%
3482751 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.85 73.0 6.32e-01 100.0% 63.1%
4056724 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.85 69.0 6.79e-01 95.1% 86.7%
3700672 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 70.0 5.10e-01 100.0% 35.7%
4322913 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.82 65.0 6.61e-01 92.7% 95.0%
3183519 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.82 71.0 6.47e-01 100.0% 80.0%
3512088 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 63.0 5.48e-01 92.7% 55.4%
3996144 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.81 67.0 6.36e-01 97.6% 80.0%
5036519 5052.1.1.0 alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein 0.81 67.0 4.07e-01 100.0% 16.2%
3243586 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.79 64.0 5.13e-01 95.1% 46.3%
3180974 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 65.0 6.01e-01 100.0% 74.5%
4539383 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.76 60.0 5.95e-01 95.1% 86.7%
3960219 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 63.0 5.31e-01 100.0% 54.7%