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IMGVR_UViG_3300042102_000637-3300042102-Ga0453251_008716_2_607

Arc-Vir

IMGVR_UViG_3300042102_000637-3300042102-Ga0453251_008716_2_607

Quality

88.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-98
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21995.2 best RNR-II_ins_dom 54.0 2.60e-14 75.6% 66.4%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l1lA02 3.30.1620.10 Alpha Beta › 2-Layer Sandwich › b-12 dependent (class ii) ribonucleotide reductase, Chain A, Domain 2 › b-12 dependent (class ii) ribonucleotide reductase, Chain A, Domain 2 0.92 71.0 6.50e-01 80.0% 68.8%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.88 67.0 3.90e-01 80.0% 11.4%
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.85 66.0 3.86e-01 82.2% 11.3%
2bo4A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.69 43.0 3.36e-01 77.8% 29.2%
7wj9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 46.0 3.18e-01 77.8% 30.4%
3mkkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 46.0 3.09e-01 80.0% 43.1%
2xvlA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 46.0 3.10e-01 80.0% 35.1%
3u61C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 41.0 3.41e-01 75.6% 38.3%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 45.0 4.00e-01 77.8% 54.5%
3n3uA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.61 41.0 2.83e-01 71.1% 21.3%
4ewcA03 1.20.120.1660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 42.0 4.58e-01 94.4% 88.0%
2xmoA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 44.0 3.01e-01 77.8% 25.7%
1b2rA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 40.0 3.29e-01 76.7% 37.7%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 42.0 2.84e-01 77.8% 20.2%
2g3mA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 44.0 2.96e-01 81.1% 38.8%
5i0fB03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 45.0 3.01e-01 83.3% 94.2%
7o62B01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 38.0 3.38e-01 87.8% 45.5%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 42.0 4.05e-01 78.9% 67.3%
2dayA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 40.0 3.75e-01 91.1% 57.5%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 41.0 4.35e-01 78.9% 85.2%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.56 48.0 4.63e-01 96.7% 92.2%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.56 41.0 3.44e-01 76.7% 54.2%
1edzA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.54 42.0 3.69e-01 82.2% 80.2%
3rofA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 3.14e-01 97.8% 41.8%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.53 44.0 3.78e-01 94.4% 68.2%
6ecpB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 40.0 3.45e-01 81.1% 79.3%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.53 37.0 3.79e-01 76.7% 76.1%
1tjyA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 39.0 3.20e-01 80.0% 49.1%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.51 37.0 3.77e-01 76.7% 82.2%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.51 41.0 3.73e-01 92.2% 81.4%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 3.30e-01 98.9% 88.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4522651 3005.1.1.1 a+b three layers › B12-dependent (class II) ribonucleotide reductase, insertion domain › B12-dependent (class II) ribonucleotide reductase, insertion domain › B12-dependent (class II) ribonucleotide reductase, insertion domain › RNR-II_ins_dom 0.98 76.0 8.05e-01 78.9% 88.7%
5051775 2500.1.1.9 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › RNR-II_ins_dom 0.96 87.0 5.21e-01 98.9% 17.1%
4208725 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.95 88.0 5.24e-01 100.0% 17.2%
4335947 3005.1.1.1 a+b three layers › B12-dependent (class II) ribonucleotide reductase, insertion domain › B12-dependent (class II) ribonucleotide reductase, insertion domain › B12-dependent (class II) ribonucleotide reductase, insertion domain › RNR-II_ins_dom 0.92 75.0 6.57e-01 84.4% 64.0%
4937370 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 69.0 4.04e-01 82.2% 11.7%
4963031 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 68.0 3.97e-01 82.2% 11.7%
4298539 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 68.0 4.08e-01 81.1% 13.5%
4993733 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.88 68.0 4.04e-01 81.1% 13.1%
5063882 1074.1.1.6 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.88 67.0 4.35e-01 81.1% 20.3%
4994375 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.88 68.0 4.12e-01 82.2% 14.6%
3972491 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 68.0 4.05e-01 82.2% 12.9%
4934525 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 66.0 3.96e-01 82.2% 13.2%
3823652 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 66.0 3.95e-01 81.1% 13.1%
4990406 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 67.0 3.96e-01 82.2% 13.6%
4015532 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.85 66.0 3.93e-01 81.1% 12.9%
4985374 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 66.0 3.93e-01 81.1% 12.7%
4067125 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 65.0 3.95e-01 81.1% 14.1%
5040104 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.84 64.0 3.88e-01 82.2% 14.1%
3178813 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.65 48.0 3.21e-01 80.0% 38.9%
3860703 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.65 54.0 4.03e-01 92.2% 47.0%
5041123 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 45.0 4.03e-01 73.3% 64.8%
5064500 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.64 47.0 3.13e-01 78.9% 32.9%
3554752 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 34.0 3.94e-01 76.7% 72.3%
4324984 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.63 46.0 3.06e-01 77.8% 32.8%
3473668 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.62 50.0 4.21e-01 91.1% 100.0%
3831792 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.61 51.0 3.75e-01 93.3% 51.0%
4973872 2005.1.1.9 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DNA_photolyase 0.60 35.0 3.07e-01 77.8% 37.8%
4016636 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.59 48.0 3.58e-01 92.2% 86.5%
5071300 601.27.1.0 alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like 0.58 51.0 4.08e-01 96.7% 72.8%
3280523 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.58 42.0 4.09e-01 76.7% 83.0%
3615090 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.58 40.0 2.66e-01 73.3% 17.3%
4011473 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 44.0 2.99e-01 82.2% 36.3%
5048701 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.58 39.0 4.00e-01 77.8% 72.9%
3552620 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 40.0 3.62e-01 87.8% 54.2%
3279680 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.57 49.0 3.56e-01 100.0% 80.4%
3820181 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.56 40.0 3.48e-01 87.8% 48.9%
3682758 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 40.0 4.01e-01 91.1% 74.4%
3990835 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.55 42.0 2.95e-01 83.3% 48.3%
5036421 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.55 41.0 2.83e-01 82.2% 32.6%
5079439 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.55 46.0 4.46e-01 95.6% 83.8%
4351629 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.53 44.0 3.19e-01 94.4% 36.6%
3713582 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.53 41.0 2.82e-01 84.4% 45.1%
4972787 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.53 43.0 4.28e-01 95.6% 88.4%
3915784 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 41.0 2.97e-01 88.9% 83.1%
3219080 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.50 33.0 3.48e-01 75.6% 76.2%
D2 high residues 114-196
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 78.0 6.39e-01 100.0% 63.4%
4lx3A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 78.0 7.28e-01 100.0% 87.1%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.83 77.0 5.97e-01 100.0% 65.1%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 72.0 5.97e-01 100.0% 71.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994372 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.94 84.0 7.20e-01 100.0% 64.2%
4946209 69.1.1.18 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.92 86.0 6.18e-01 100.0% 40.0%
4998392 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 85.0 6.57e-01 100.0% 54.5%
1291738 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 83.0 7.43e-01 100.0% 88.2%
4993871 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 80.0 7.08e-01 100.0% 76.5%
2553113 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 75.0 6.37e-01 100.0% 60.9%
4975971 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 79.0 6.70e-01 100.0% 73.8%
4978364 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 78.0 6.93e-01 100.0% 94.8%
5023539 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 77.0 6.20e-01 100.0% 71.6%
2546507 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.84 78.0 6.40e-01 100.0% 65.0%
4999896 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 77.0 6.68e-01 100.0% 86.4%
4999902 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 78.0 6.35e-01 100.0% 59.3%
4779324 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 78.0 7.28e-01 100.0% 87.1%
4975578 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 77.0 5.25e-01 100.0% 38.5%
3518586 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.83 77.0 5.64e-01 100.0% 44.4%
1758564 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.83 76.0 5.90e-01 100.0% 90.8%
4993813 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 76.0 6.05e-01 100.0% 66.3%
4944478 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 75.0 6.62e-01 100.0% 96.7%
4970868 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 73.0 6.38e-01 100.0% 92.8%
4821446 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 74.0 6.49e-01 100.0% 92.5%
4971400 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 73.0 4.90e-01 100.0% 35.3%
4999893 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 68.0 6.10e-01 100.0% 93.0%
3602168 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.71 63.0 5.18e-01 100.0% 59.4%
2168114 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.51 32.0 3.64e-01 84.3% 100.0%