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IMGVR_UViG_3300042105_000530-3300042105-Ga0453254_003373_3_350
Arc-VirIMGVR_UViG_3300042105_000530-3300042105-Ga0453254_003373_3_350
Identity
- Kingdom:
- archaea
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-113
Domain cluster:
rep: P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00436__D322-415
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02739.23 best | 5_3_exonuc_N | 54.3 | 1.90e-14 | 80.6% | 46.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5v07Z01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.62 | 52.0 | 4.11e-01 | 89.3% | 50.0% |
| 3kvnA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.58 | 42.0 | 3.01e-01 | 75.7% | 89.0% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.53 | 36.0 | 3.19e-01 | 71.8% | 45.3% |
| 2rhmC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.53e-01 | 89.3% | 80.0% |
| 6nklB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.51 | 34.0 | 3.16e-01 | 75.7% | 51.9% |
| 3b9oA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 39.0 | 2.70e-01 | 85.4% | 78.8% |
| 5w4zA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 39.0 | 2.65e-01 | 85.4% | 79.1% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 40.0 | 3.47e-01 | 88.3% | 76.0% |
| 5dqpB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.50 | 35.0 | 2.40e-01 | 73.8% | 70.3% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029535 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.86 | 68.0 | 5.49e-01 | 92.2% | 47.2% |
| 3261281 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.82 | 67.0 | 5.55e-01 | 92.2% | 52.4% |
| 4031817 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.82 | 66.0 | 5.47e-01 | 92.2% | 51.2% |
| 3942272 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.81 | 66.0 | 5.45e-01 | 89.3% | 51.8% |
| 4995752 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.81 | 64.0 | 5.38e-01 | 92.2% | 52.1% |
| 3964138 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.80 | 65.0 | 5.25e-01 | 88.3% | 48.3% |
| 4125023 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.79 | 65.0 | 5.40e-01 | 90.3% | 52.4% |
| 3387660 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.79 | 64.0 | 5.29e-01 | 90.3% | 51.2% |
| 4299585 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.79 | 64.0 | 5.18e-01 | 92.2% | 47.6% |
| 4040391 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.78 | 67.0 | 5.45e-01 | 92.2% | 51.7% |
| 3283240 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.75 | 66.0 | 5.24e-01 | 93.2% | 52.3% |
| 4157264 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.70 | 62.0 | 5.06e-01 | 95.1% | 53.9% |
| 3271039 | 2006.1.4.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N | 0.68 | 48.0 | 4.65e-01 | 77.7% | 66.1% |
| 3744314 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.64 | 53.0 | 3.84e-01 | 89.3% | 37.5% |
| 3823952 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.63 | 53.0 | 3.86e-01 | 89.3% | 40.0% |
| 3335892 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.63 | 53.0 | 3.80e-01 | 89.3% | 37.9% |
| 3937112 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.63 | 53.0 | 3.89e-01 | 89.3% | 39.8% |
| 4020826 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.63 | 52.0 | 3.89e-01 | 89.3% | 40.4% |
| 4001799 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.63 | 52.0 | 3.87e-01 | 89.3% | 39.8% |
| 3581443 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.62 | 52.0 | 3.67e-01 | 89.3% | 33.8% |
| 3472483 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.62 | 52.0 | 3.65e-01 | 89.3% | 33.2% |
| 3170744 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.62 | 52.0 | 3.69e-01 | 89.3% | 34.9% |
| 4028970 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.62 | 51.0 | 3.77e-01 | 89.3% | 40.7% |
| 3205760 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.60 | 50.0 | 3.71e-01 | 89.3% | 60.0% |
| 3875510 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.60 | 50.0 | 3.94e-01 | 89.3% | 50.5% |
| 4021778 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.60 | 50.0 | 3.59e-01 | 89.3% | 61.0% |
| 3789016 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.60 | 50.0 | 3.58e-01 | 89.3% | 61.4% |
| 1205418 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.59 | 42.0 | 3.03e-01 | 74.8% | 49.7% |
| None | — | 0.59 | 44.0 | 3.11e-01 | 80.6% | 89.7% | |
| 4825029 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.55 | 38.0 | 3.25e-01 | 71.8% | 84.1% |
| 4346434 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.54 | 39.0 | 3.53e-01 | 74.8% | 84.8% |
| 3359920 | 2004.1.1.47 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha | 0.54 | 35.0 | 3.15e-01 | 89.3% | 46.9% |
| 3679097 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 38.0 | 3.07e-01 | 76.7% | 94.2% |
| 4421675 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 3.28e-01 | 81.6% | 86.5% |
| 4621007 | 2003.1.2.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 | 0.51 | 37.0 | 3.15e-01 | 76.7% | 88.9% |