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IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_10692_10805
Arc-VirIMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_10692_10805
Identity
- Kingdom:
- archaea
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-35
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3grcA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.85 | 65.0 | 4.39e-01 | 88.2% | 24.0% |
| 2vq3A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.80 | 66.0 | 4.18e-01 | 100.0% | 25.4% |
| 3hs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.78 | 62.0 | 4.25e-01 | 94.1% | 30.2% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 63.0 | 3.67e-01 | 100.0% | 72.9% |
| 2dewX03 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.75 | 55.0 | 3.17e-01 | 85.3% | 8.4% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.74 | 54.0 | 4.07e-01 | 88.2% | 34.0% |
| 1f2dA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 57.0 | 4.18e-01 | 97.1% | 31.4% |
| 3dfuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 56.0 | 3.94e-01 | 100.0% | 25.6% |
| 5jy1A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.72 | 54.0 | 3.28e-01 | 94.1% | 21.4% |
| 1zbqA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.72 | 53.0 | 3.27e-01 | 94.1% | 26.6% |
| 4n40A02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.72 | 53.0 | 4.07e-01 | 88.2% | 34.4% |
| 1u3dA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.72 | 59.0 | 3.89e-01 | 100.0% | 43.5% |
| 2couA01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.72 | 55.0 | 4.22e-01 | 94.1% | 36.0% |
| 5cxpA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 56.0 | 3.35e-01 | 97.1% | 23.7% |
| 1dwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.70 | 54.0 | 3.26e-01 | 94.1% | 13.0% |
| 1gkuB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 57.0 | 3.56e-01 | 100.0% | 32.4% |
| 3ngxA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.70 | 55.0 | 4.26e-01 | 94.1% | 42.9% |
| 4bmdA02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.69 | 50.0 | 3.82e-01 | 88.2% | 30.3% |
| 5gzjB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 53.0 | 3.44e-01 | 100.0% | 28.6% |
| 3mweB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 54.0 | 3.76e-01 | 97.1% | 89.9% |
| 1xdiA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.68 | 52.0 | 3.68e-01 | 91.2% | 47.9% |
| 3qyfA01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.68 | 51.0 | 3.44e-01 | 100.0% | 46.1% |
| 1dynA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 53.0 | 3.77e-01 | 94.1% | 69.0% |
| 3ke8A01 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.66 | 51.0 | 3.66e-01 | 91.2% | 71.7% |
| 3vaxA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.66 | 51.0 | 3.14e-01 | 100.0% | 31.9% |
| 2zgiD02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.66 | 51.0 | 3.50e-01 | 100.0% | 23.3% |
| 3fg2P02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 54.0 | 3.77e-01 | 100.0% | 46.8% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.64 | 49.0 | 3.79e-01 | 100.0% | 41.8% |
| 3n6xA02 | 3.40.50.11290 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 44.0 | 3.43e-01 | 94.1% | 31.3% |
| 1jj2F00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.57 | 45.0 | 3.25e-01 | 100.0% | 40.3% |
| 2l42A00 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.53 | 39.0 | 3.04e-01 | 94.1% | 53.6% |
| 4c0rA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 35.0 | 2.80e-01 | 100.0% | 30.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3192362 | 7512.1.1.27 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › O-FucT | 0.86 | 74.0 | 4.39e-01 | 97.1% | 28.9% |
| 3180419 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.86 | 73.0 | 4.32e-01 | 97.1% | 27.8% |
| 3973896 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.83 | 63.0 | 4.24e-01 | 88.2% | 23.1% |
| 3601445 | 7504.1.1.0 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like | 0.83 | 68.0 | 4.08e-01 | 94.1% | 14.2% |
| 3194229 | 7512.1.1.27 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › O-FucT | 0.83 | 69.0 | 4.22e-01 | 97.1% | 31.2% |
| 4069072 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.83 | 67.0 | 4.75e-01 | 94.1% | 36.2% |
| 5039155 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.81 | 62.0 | 4.20e-01 | 91.2% | 23.3% |
| 4968859 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.80 | 70.0 | 4.69e-01 | 100.0% | 50.4% |
| 4995781 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.80 | 66.0 | 4.90e-01 | 100.0% | 41.1% |
| 3670567 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.80 | 60.0 | 5.30e-01 | 88.2% | 54.5% |
| 3465970 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.78 | 59.0 | 4.32e-01 | 88.2% | 30.0% |
| 4952190 | 2007.15.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr | 0.78 | 62.0 | 4.12e-01 | 94.1% | 26.4% |
| 141123 | 2007.1.6.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N | 0.74 | 56.0 | 4.02e-01 | 88.2% | 33.3% |
| 4038226 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.71 | 52.0 | 3.95e-01 | 91.2% | 35.0% |
| 3978722 | 3261.1.1.2 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_1st | 0.70 | 54.0 | 4.78e-01 | 100.0% | 65.0% |
| 3867713 | 105.2.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C | 0.69 | 53.0 | 3.70e-01 | 91.2% | 25.6% |
| 5079187 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.64 | 50.0 | 3.70e-01 | 97.1% | 94.3% |
| 4989706 | 2007.23.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › CbiG N-terminal domain-like › CbiG N-terminal domain-like › CbiG_N | 0.64 | 49.0 | 3.61e-01 | 100.0% | 32.2% |
| 4023823 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.60 | 48.0 | 3.42e-01 | 97.1% | 46.4% |