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IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_3750_4358
Arc-VirIMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_3750_4358
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-134
Domain cluster:
rep: IMGVR_UViG_2684622743_000001-2684622743-2685523762__D15-101
D2
high
residues 138-192
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.78 | 69.0 | 5.75e-01 | 100.0% | 61.1% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.72 | 63.0 | 5.80e-01 | 98.2% | 100.0% |
| 1m5zA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 49.0 | 4.23e-01 | 100.0% | 92.3% |
| 2kbsA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 49.0 | 4.18e-01 | 100.0% | 90.2% |
| 1vjqA00 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.56 | 41.0 | 3.80e-01 | 100.0% | 60.3% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 47.0 | 2.84e-01 | 100.0% | 14.3% |
| 1p1dA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 44.0 | 3.85e-01 | 100.0% | 93.6% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 45.0 | 3.00e-01 | 100.0% | 24.2% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 41.0 | 3.18e-01 | 92.7% | 83.6% |
| 8enbA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.50 | 28.0 | 2.42e-01 | 100.0% | 34.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.87 | 81.0 | 5.83e-01 | 100.0% | 43.6% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.84 | 73.0 | 7.17e-01 | 100.0% | 88.1% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 69.0 | 6.20e-01 | 98.2% | 94.7% |
| 3945288 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.76 | 68.0 | 4.97e-01 | 100.0% | 49.3% |
| 3205316 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.74 | 66.0 | 5.58e-01 | 100.0% | 93.3% |
| 3516152 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 65.0 | 5.62e-01 | 100.0% | 92.9% |
| 4617493 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 65.0 | 5.74e-01 | 100.0% | 92.5% |
| 3603211 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 59.0 | 5.28e-01 | 100.0% | 91.3% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.67 | 56.0 | 5.11e-01 | 100.0% | 94.9% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.65 | 51.0 | 5.18e-01 | 94.5% | 94.5% |
| 3936072 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.58 | 50.0 | 4.14e-01 | 100.0% | 84.8% |
| 3924448 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.56 | 48.0 | 3.83e-01 | 100.0% | 75.0% |
| 3966724 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 49.0 | 4.06e-01 | 100.0% | 64.2% |
| 3466090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.54 | 46.0 | 3.06e-01 | 100.0% | 23.1% |
| 3472987 | 2.1.1.228 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind | 0.54 | 38.0 | 2.69e-01 | 80.0% | 73.5% |
| 4025090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.53 | 45.0 | 2.88e-01 | 100.0% | 19.1% |
| 3301005 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.53 | 38.0 | 2.47e-01 | 76.4% | 84.6% |
| 5016214 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.51 | 44.0 | 2.96e-01 | 100.0% | 26.8% |