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IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_52717_52995

Arc-Vir

IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_52717_52995

Identity

Kingdom:
archaea

Quality

94.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-90
PDB
Domain cluster: rep: IMGVR_UViG_3300021491_000005-3300021491-Ga0190332_10000154__D9-112
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.73 43.0 4.34e-01 85.2% 59.1%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 48.0 3.97e-01 83.0% 68.4%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 48.0 3.98e-01 85.2% 73.0%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 47.0 3.90e-01 83.0% 65.6%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 41.0 2.84e-01 73.9% 39.3%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 51.0 4.02e-01 96.6% 73.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 45.0 3.29e-01 84.1% 96.0%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 40.0 2.79e-01 70.5% 51.9%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 45.0 3.63e-01 83.0% 77.8%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 3.03e-01 98.9% 23.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.57e-01 93.2% 73.8%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 50.0 4.00e-01 98.9% 94.9%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.57 47.0 3.98e-01 94.3% 93.7%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 43.0 3.18e-01 84.1% 95.5%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 45.0 3.71e-01 92.0% 85.9%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.35e-01 78.4% 53.0%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 38.0 3.37e-01 75.0% 90.1%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.53 37.0 3.44e-01 70.5% 66.4%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.86e-01 86.4% 58.2%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 3.12e-01 98.9% 30.2%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.19e-01 89.8% 47.7%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.73e-01 90.9% 78.7%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 42.0 2.76e-01 100.0% 21.2%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 46.0 3.31e-01 100.0% 48.1%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 41.0 3.21e-01 89.8% 68.2%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.74e-01 86.4% 72.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4523125 813.1.1.1 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone 0.73 59.0 4.41e-01 87.5% 54.4%
3512045 292.2.1.8 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Herpes_UL52 0.67 46.0 3.85e-01 97.7% 41.3%
3326365 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 3.42e-01 87.5% 49.0%
4166761 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.59 51.0 3.88e-01 95.5% 67.3%
4561053 5084.1.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D 0.58 47.0 3.73e-01 89.8% 92.4%
3658717 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.58 47.0 3.44e-01 87.5% 53.9%
3726964 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.57 51.0 3.81e-01 100.0% 61.8%
4043935 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.57 51.0 4.48e-01 100.0% 96.9%
3697981 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.57 51.0 3.88e-01 100.0% 59.0%
3498392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.49e-01 100.0% 94.1%
3185455 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 43.0 3.40e-01 84.1% 65.9%
3076016 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.55 39.0 3.64e-01 96.6% 57.8%
3812208 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 49.0 3.08e-01 100.0% 27.6%
2492033 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.54 49.0 4.17e-01 100.0% 93.6%
4934001 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.54 48.0 4.31e-01 100.0% 98.4%
4958477 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.87e-01 90.9% 73.3%
5012336 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.53 40.0 3.21e-01 89.8% 40.5%
3492298 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 48.0 2.98e-01 98.9% 31.5%
3287259 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 42.0 2.84e-01 100.0% 22.7%
3484299 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 47.0 2.98e-01 98.9% 33.3%
3972580 331.1.1.3 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.52 31.0 3.25e-01 79.5% 63.7%
3719143 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 47.0 4.06e-01 100.0% 95.6%
3487292 5.1.4.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.52 46.0 2.86e-01 100.0% 19.4%
4159140 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.51 46.0 2.87e-01 100.0% 30.1%
3718195 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.51 41.0 2.98e-01 89.8% 89.3%
4937819 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.50 45.0 4.01e-01 100.0% 96.0%
3602548 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.50 44.0 3.99e-01 100.0% 95.2%