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IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_53118_53360

Arc-Vir

IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_53118_53360

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-78
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 63.0 5.80e-01 98.2% 100.0%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 51.0 5.00e-01 92.9% 74.2%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.69 53.0 5.25e-01 85.7% 96.6%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 56.0 5.47e-01 96.4% 100.0%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 56.0 5.18e-01 98.2% 98.7%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.67 58.0 4.75e-01 100.0% 72.6%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 56.0 3.73e-01 100.0% 23.3%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.62 49.0 4.71e-01 96.4% 76.1%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.61 50.0 4.66e-01 96.4% 85.5%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 4.18e-01 100.0% 63.1%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 4.32e-01 100.0% 73.0%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.58 48.0 4.54e-01 96.4% 76.8%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 4.09e-01 100.0% 61.5%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.56e-01 75.0% 50.0%
2x51A06 3.30.70.1590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.47e-01 94.6% 100.0%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.95e-01 91.1% 70.8%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.57 46.0 4.33e-01 96.4% 78.1%
1vi7A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.43e-01 98.2% 85.9%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.57 48.0 4.38e-01 100.0% 87.2%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 4.13e-01 96.4% 80.0%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.56 45.0 4.18e-01 94.6% 92.2%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 3.94e-01 100.0% 69.9%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 43.0 4.04e-01 94.6% 75.3%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 43.0 4.13e-01 92.9% 89.9%
3lduA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.55 43.0 3.11e-01 91.1% 31.1%
2gqcA01 3.30.70.2080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 4.05e-01 89.3% 100.0%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.54 44.0 3.97e-01 100.0% 73.3%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.53 39.0 3.88e-01 83.9% 75.4%
4lbhA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.53 41.0 3.69e-01 96.4% 84.0%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.85e-01 91.1% 81.2%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 40.0 3.84e-01 89.3% 83.8%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.52 43.0 3.74e-01 100.0% 85.4%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 40.0 3.29e-01 91.1% 89.2%
3udcA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.74e-01 100.0% 94.3%
1x9zA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.52 41.0 3.68e-01 96.4% 73.0%
1g9rA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 41.0 2.76e-01 96.4% 92.4%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.57e-01 96.4% 65.3%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 41.0 3.35e-01 96.4% 75.6%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 39.0 3.72e-01 98.2% 72.2%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 41.0 3.26e-01 98.2% 78.8%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.50 40.0 3.65e-01 100.0% 98.8%
2mobA00 3.90.56.10 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM 0.50 40.0 3.54e-01 96.4% 92.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936264 2003.1.2.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 0.77 59.0 3.73e-01 98.2% 17.5%
3939429 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.71 61.0 3.45e-01 100.0% 11.3%
4441682 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.68 59.0 3.59e-01 98.2% 15.5%
3629193 101.1.9.23 alpha arrays › HTH › HTH › Putative DNA-binding domain › TdIF1_2nd 0.65 56.0 4.46e-01 98.2% 63.5%
3798287 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 55.0 4.69e-01 100.0% 82.1%
2876157 101.1.9.105 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.63 50.0 5.17e-01 91.1% 100.0%
4806761 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 43.0 3.60e-01 75.0% 44.8%
3289373 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.62 52.0 3.97e-01 100.0% 41.4%
3284116 304.56.1.5 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › PaaX_M 0.61 50.0 4.74e-01 96.4% 80.0%
5071804 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.61 53.0 4.59e-01 100.0% 76.7%
3532208 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.61 48.0 3.44e-01 91.1% 42.2%
3959648 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.61 49.0 3.73e-01 100.0% 36.9%
5040129 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.60 50.0 4.36e-01 100.0% 69.5%
4600309 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.60 47.0 4.04e-01 91.1% 77.0%
4174001 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.60 49.0 4.78e-01 96.4% 81.5%
4946311 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 48.0 4.48e-01 96.4% 80.0%
4933206 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.59 49.0 4.30e-01 92.9% 92.9%
4033471 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.59 48.0 4.25e-01 100.0% 69.5%
3953647 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.59 48.0 4.23e-01 100.0% 69.5%
5057038 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.59 47.0 3.42e-01 92.9% 74.9%
4982880 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.59 50.0 3.57e-01 96.4% 45.9%
4930161 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.58 49.0 4.00e-01 96.4% 64.5%
5315 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.58 48.0 4.12e-01 100.0% 63.4%
5007807 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.58 47.0 4.08e-01 96.4% 67.4%
3988398 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.58 47.0 4.15e-01 100.0% 68.4%
4141722 605.1.1.289 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF26892 0.57 43.0 3.65e-01 92.9% 48.0%
4034379 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 39.0 3.01e-01 75.0% 48.0%
4626202 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.56 45.0 3.72e-01 94.6% 60.9%
4289242 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.56 46.0 4.20e-01 100.0% 78.8%
4981685 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.55 44.0 4.12e-01 100.0% 81.2%
5314 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.55 44.0 3.94e-01 100.0% 69.9%
3285236 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 42.0 4.16e-01 89.3% 86.7%
4605166 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.55 43.0 3.99e-01 100.0% 82.4%
4235437 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.55 42.0 3.78e-01 98.2% 63.2%
4535808 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.55 45.0 4.05e-01 100.0% 77.6%
4940103 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.57e-01 75.0% 71.4%
5059195 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.54 45.0 4.47e-01 96.4% 98.3%
3184467 304.120.1.10 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF25904 0.54 41.0 4.04e-01 87.5% 90.0%
4956112 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.54 42.0 3.89e-01 98.2% 69.4%
4646162 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.53 43.0 4.17e-01 96.4% 83.1%
4623277 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.53 42.0 3.86e-01 100.0% 77.6%
4172994 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.52 41.0 3.78e-01 100.0% 81.2%
5045022 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.28e-01 91.1% 51.7%
4211006 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.52 40.0 3.78e-01 96.4% 83.7%
4962749 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.52 41.0 3.72e-01 100.0% 77.8%
3278372 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.52 41.0 3.97e-01 92.9% 81.5%
1114523 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 41.0 3.71e-01 96.4% 62.8%
4950716 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.51 36.0 3.13e-01 80.4% 75.2%
4053995 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.51 41.0 3.64e-01 100.0% 71.6%
5010704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.17e-01 92.9% 76.4%
3589130 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.51 42.0 4.27e-01 98.2% 98.2%
4988334 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.51 40.0 3.55e-01 92.9% 71.1%
5073598 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.51 35.0 3.12e-01 75.0% 73.3%
3741150 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.51 35.0 3.27e-01 76.8% 56.2%
3266992 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 36.0 3.51e-01 78.6% 67.7%
5028046 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.50 39.0 3.95e-01 94.6% 96.4%
1790206 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.50 40.0 3.22e-01 98.2% 52.6%
3931554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.10e-01 94.6% 46.0%
3784153 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.50 43.0 3.50e-01 98.2% 87.3%
4072263 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.50 38.0 3.54e-01 100.0% 73.3%