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IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_55141_55326

Arc-Vir

IMGVR_UViG_3300042270_000132-3300042270-Ga0451653_000639_55141_55326

Quality

85.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-60
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 56.0 4.41e-01 78.3% 49.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.74 48.0 3.96e-01 83.3% 38.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 53.0 4.30e-01 80.0% 46.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 43.0 4.17e-01 71.7% 57.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 45.0 3.66e-01 76.7% 36.7%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 43.0 3.67e-01 73.3% 38.6%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.66 51.0 3.33e-01 86.7% 88.5%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.64 37.0 3.61e-01 70.0% 47.1%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.15e-01 91.7% 87.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.86e-01 78.3% 62.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.03e-01 88.3% 78.6%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.62 37.0 3.71e-01 70.0% 54.7%
6bs6B01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 44.0 3.81e-01 75.0% 96.7%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 49.0 3.18e-01 86.7% 99.3%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 50.0 3.59e-01 90.0% 43.3%
1u08A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 46.0 3.51e-01 81.7% 67.6%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 40.0 3.17e-01 81.7% 33.1%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 38.0 3.00e-01 70.0% 30.9%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 39.0 3.85e-01 75.0% 63.5%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 3.60e-01 71.7% 52.7%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 41.0 2.96e-01 71.7% 28.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 48.0 3.93e-01 88.3% 91.7%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 41.0 2.96e-01 75.0% 77.5%
6i8wB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 49.0 3.15e-01 96.7% 71.0%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.53e-01 78.3% 11.1%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 39.0 3.16e-01 71.7% 61.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 2.94e-01 95.0% 20.3%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 40.0 3.48e-01 75.0% 77.6%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 43.0 3.21e-01 83.3% 82.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 35.0 3.56e-01 76.7% 59.7%
3oggA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 43.0 3.10e-01 83.3% 80.4%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.57 38.0 3.72e-01 71.7% 82.9%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 39.0 2.66e-01 75.0% 65.2%
3hlkB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 3.09e-01 100.0% 82.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 48.0 4.22e-01 95.0% 71.4%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.83e-01 95.0% 84.7%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 36.0 3.23e-01 70.0% 54.3%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 43.0 2.85e-01 91.7% 43.2%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.54 33.0 2.01e-01 70.0% 8.2%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.54 40.0 2.95e-01 78.3% 39.9%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 2.69e-01 96.7% 12.0%
4f0jA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.55e-01 81.7% 28.2%
1vgyA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 42.0 2.78e-01 88.3% 72.8%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 41.0 2.66e-01 86.7% 67.0%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 38.0 3.32e-01 80.0% 51.1%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.51 37.0 2.96e-01 83.3% 47.2%
1orvA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.68e-01 88.3% 39.9%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 45.0 3.65e-01 96.7% 80.0%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 39.0 2.71e-01 91.7% 69.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 37.0 2.63e-01 83.3% 65.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995743 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 44.0 3.48e-01 70.0% 30.8%
4946426 3241.1.1.0 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.72 52.0 3.53e-01 76.7% 23.7%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 43.0 4.21e-01 71.7% 55.4%
3974596 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 40.0 4.23e-01 71.7% 61.8%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.69 46.0 4.19e-01 75.0% 51.2%
3927846 109.4.1.1948 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.69 49.0 3.24e-01 75.0% 65.6%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.69 47.0 4.02e-01 71.7% 96.8%
3717203 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 57.0 3.92e-01 91.7% 91.8%
2797622 2003.1.10.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › ATPgraspMvdD 0.68 47.0 3.71e-01 83.3% 34.9%
3567156 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 57.0 3.90e-01 100.0% 76.4%
3764706 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 56.0 3.80e-01 100.0% 80.0%
4028178 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.66 46.0 3.62e-01 73.3% 75.2%
3952545 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.65 50.0 4.57e-01 81.7% 94.9%
1815428 3454.1.1.1 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.65 47.0 4.11e-01 96.7% 49.5%
4359927 2003.1.2.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.64 41.0 2.88e-01 81.7% 20.0%
4933731 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.63 58.0 3.39e-01 100.0% 23.3%
160941 330.1.1.19 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.63 46.0 3.68e-01 78.3% 46.2%
4993093 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.63 46.0 2.92e-01 80.0% 36.7%
3186255 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.62 52.0 3.33e-01 95.0% 19.1%
3300506 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.61 44.0 3.38e-01 76.7% 47.1%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 44.0 3.67e-01 76.7% 51.4%
5049640 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 3.74e-01 76.7% 51.9%
5037511 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.60 53.0 3.13e-01 96.7% 30.0%
4322168 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.59 44.0 2.88e-01 78.3% 65.6%
5034252 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 44.0 3.49e-01 81.7% 51.5%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.58 41.0 3.72e-01 75.0% 79.5%
4959371 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 46.0 3.62e-01 86.7% 91.2%
4659931 2003.1.2.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.58 48.0 3.01e-01 95.0% 32.6%
3790333 11.1.1.1009 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 0.57 53.0 3.63e-01 100.0% 32.1%
3845291 220.1.1.119 beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.57 49.0 3.24e-01 93.3% 50.2%
3373588 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.57 46.0 3.69e-01 90.0% 75.8%
4408783 223.1.1.45 a+b three layers › Profilin-like › sensor domains › sensor domains › GdpP_PAS 0.56 47.0 4.17e-01 98.3% 88.4%
3894482 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 44.0 2.85e-01 85.0% 69.8%
4971974 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 38.0 2.73e-01 81.7% 26.2%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 3.90e-01 86.7% 57.8%
3537588 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 39.0 2.86e-01 75.0% 30.9%
329360 3534.1.1.2 beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1285_C 0.55 38.0 3.26e-01 71.7% 56.4%
3388135 4292.2.1.1 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG 0.55 40.0 3.68e-01 88.3% 61.3%
3803524 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.55 39.0 3.16e-01 85.0% 40.9%
5007120 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 44.0 2.86e-01 90.0% 82.9%
3997765 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.54 36.0 3.29e-01 71.7% 48.9%
4997576 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.54 40.0 3.21e-01 78.3% 92.7%
4980695 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 38.0 3.07e-01 73.3% 49.1%
5017794 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 38.0 3.44e-01 78.3% 80.0%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 2.98e-01 71.7% 62.5%
3682832 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 42.0 3.08e-01 85.0% 91.0%
3804264 64.1.1.8 beta meanders › WW domain-like › WW domain › WW domain › DUF7028 0.53 38.0 3.54e-01 81.7% 61.2%
4989946 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 42.0 3.45e-01 88.3% 79.1%
3701944 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.51 38.0 2.75e-01 80.0% 78.9%
3606808 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 43.0 2.81e-01 100.0% 21.5%