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IMGVR_UViG_3300042274_000687-3300042274-Ga0451657_014675_2_373
Arc-VirIMGVR_UViG_3300042274_000687-3300042274-Ga0451657_014675_2_373
Identity
- Kingdom:
- archaea
Quality
62.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-18_76-123
D2
medium
residues 19-75
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 46.0 | 3.96e-01 | 73.7% | 92.0% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.62 | 49.0 | 3.84e-01 | 87.7% | 66.9% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 41.0 | 3.37e-01 | 70.2% | 47.7% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.61 | 43.0 | 3.07e-01 | 77.2% | 44.0% |
| 1inpA02 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.60 | 44.0 | 3.00e-01 | 77.2% | 55.6% |
| 3mtiB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 36.0 | 2.55e-01 | 70.2% | 18.9% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 44.0 | 3.19e-01 | 80.7% | 42.0% |
| 2jlmA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 44.0 | 3.14e-01 | 80.7% | 40.1% |
| 3mr7A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 43.0 | 3.17e-01 | 80.7% | 62.4% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.59 | 43.0 | 3.82e-01 | 78.9% | 78.2% |
| 1ej0A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 45.0 | 3.18e-01 | 82.5% | 42.2% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.58 | 48.0 | 3.85e-01 | 94.7% | 89.8% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.21e-01 | 75.4% | 63.3% |
| 1u8xX02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.57 | 39.0 | 2.56e-01 | 71.9% | 69.3% |
| 1z90B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 43.0 | 2.67e-01 | 82.5% | 17.1% |
| 6hbzA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 49.0 | 3.62e-01 | 100.0% | 55.3% |
| 4am6A02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 47.0 | 3.60e-01 | 100.0% | 40.0% |
| 3l7oA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 36.0 | 3.38e-01 | 78.9% | 54.2% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.77e-01 | 87.7% | 93.3% |
| 3o4fH02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 39.0 | 2.69e-01 | 80.7% | 20.2% |
| 2kr7A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 49.0 | 4.14e-01 | 100.0% | 73.4% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.55 | 42.0 | 3.65e-01 | 86.0% | 81.7% |
| 3jzyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 46.0 | 3.70e-01 | 100.0% | 91.1% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 3.24e-01 | 93.0% | 92.2% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.53 | 41.0 | 3.27e-01 | 87.7% | 70.8% |
| 2py6A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 2.90e-01 | 84.2% | 51.1% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.64e-01 | 91.2% | 85.3% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.30e-01 | 75.4% | 77.3% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.52 | 41.0 | 3.07e-01 | 91.2% | 35.6% |
| 1m0sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 33.0 | 3.09e-01 | 78.9% | 50.0% |
| 2rkvA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 43.0 | 2.92e-01 | 91.2% | 61.2% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 36.0 | 3.45e-01 | 77.2% | 95.9% |
| 2i6tA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.52 | 45.0 | 3.34e-01 | 98.2% | 75.7% |
| 3bzbB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.73e-01 | 82.5% | 39.0% |
| 4it7A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.34e-01 | 86.0% | 52.3% |
| 4ndhB00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 42.0 | 3.03e-01 | 93.0% | 30.3% |
| 2fmaA00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.51 | 39.0 | 3.86e-01 | 93.0% | 76.3% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.51 | 44.0 | 3.17e-01 | 100.0% | 92.9% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.61e-01 | 94.7% | 88.5% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 43.0 | 3.31e-01 | 98.2% | 84.7% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.41e-01 | 93.0% | 86.0% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 42.0 | 3.80e-01 | 96.5% | 93.8% |
| 2vdwB02 | 3.40.50.11680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Poxvirus mRNA capping enzyme, small subunit | 0.50 | 37.0 | 3.03e-01 | 86.0% | 56.7% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3214852 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.65 | 49.0 | 2.99e-01 | 80.7% | 78.9% |
| 3660458 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.65 | 47.0 | 3.99e-01 | 77.2% | 97.9% |
| 3394063 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.65 | 41.0 | 2.80e-01 | 70.2% | 17.4% |
| 4947850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 3.76e-01 | 77.2% | 81.0% |
| 271678 | 304.4.1.9 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase | 0.62 | 48.0 | 3.73e-01 | 87.7% | 60.9% |
| 4950106 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.61 | 44.0 | 3.12e-01 | 75.4% | 25.3% |
| 4488169 | 2004.1.1.63 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE | 0.61 | 42.0 | 3.00e-01 | 73.7% | 77.3% |
| 4969221 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.61 | 45.0 | 2.78e-01 | 77.2% | 21.3% |
| 2512800 | 304.4.1.9 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase | 0.61 | 48.0 | 3.70e-01 | 89.5% | 59.9% |
| 4946370 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.61 | 45.0 | 2.91e-01 | 80.7% | 38.3% |
| 3605723 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.60 | 44.0 | 4.00e-01 | 80.7% | 95.0% |
| 5065076 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.59 | 42.0 | 3.04e-01 | 80.7% | 25.4% |
| 3816355 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 44.0 | 3.78e-01 | 82.5% | 82.8% |
| 4243831 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.58 | 44.0 | 3.82e-01 | 86.0% | 83.9% |
| 3828529 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.57 | 42.0 | 3.66e-01 | 82.5% | 80.0% |
| 4883269 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.57 | 47.0 | 4.04e-01 | 94.7% | 89.5% |
| None | — | 0.57 | 46.0 | 2.93e-01 | 93.0% | 53.4% | |
| 3596147 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.57 | 48.0 | 4.02e-01 | 98.2% | 89.5% |
| 3287678 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.57 | 41.0 | 3.74e-01 | 78.9% | 88.7% |
| 3579786 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 3.60e-01 | 82.5% | 84.7% |
| 4140824 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.57 | 44.0 | 3.75e-01 | 89.5% | 77.9% |
| 3255400 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 41.0 | 2.50e-01 | 78.9% | 12.7% |
| 4940261 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.56 | 40.0 | 3.80e-01 | 77.2% | 95.7% |
| 4990439 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.56 | 39.0 | 3.29e-01 | 78.9% | 42.0% |
| 2538977 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.55 | 45.0 | 3.91e-01 | 94.7% | 88.3% |
| 3801392 | 2498.1.1.74 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Metallopep | 0.55 | 48.0 | 2.95e-01 | 100.0% | 75.7% |
| 3783593 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.55 | 39.0 | 2.51e-01 | 80.7% | 33.5% |
| 3798239 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 41.0 | 3.68e-01 | 84.2% | 87.1% |
| 3480120 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 41.0 | 3.61e-01 | 84.2% | 86.7% |
| 4938000 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.54 | 38.0 | 3.23e-01 | 73.7% | 82.1% |
| 5050129 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.54 | 46.0 | 3.73e-01 | 94.7% | 87.3% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 2.86e-01 | 82.5% | 95.1% |
| 3688261 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 38.0 | 3.26e-01 | 77.2% | 74.0% |
| 3280969 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 41.0 | 3.43e-01 | 82.5% | 75.0% |
| None | — | 0.53 | 40.0 | 2.83e-01 | 82.5% | 95.7% | |
| 5029220 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 37.0 | 3.15e-01 | 77.2% | 45.6% |
| 5052844 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 36.0 | 2.53e-01 | 71.9% | 69.3% |
| 4956059 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 38.0 | 2.87e-01 | 80.7% | 33.3% |
| 4991282 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.53 | 43.0 | 3.23e-01 | 91.2% | 60.7% |
| 4602428 | 304.4.1.9 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase | 0.53 | 44.0 | 3.25e-01 | 93.0% | 82.0% |
| 3171965 | 323.1.1.12 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N | 0.53 | 44.0 | 2.97e-01 | 91.2% | 61.4% |
| 3821254 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.53 | 42.0 | 3.25e-01 | 87.7% | 80.8% |
| 4116230 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.52 | 44.0 | 3.09e-01 | 91.2% | 87.2% |
| 1872763 | 323.1.1.12 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N | 0.52 | 43.0 | 2.90e-01 | 91.2% | 59.3% |
| 4190752 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.52 | 37.0 | 3.19e-01 | 77.2% | 71.6% |
| 3597309 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 43.0 | 3.46e-01 | 94.7% | 89.0% |
| 4683313 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.52 | 38.0 | 3.04e-01 | 78.9% | 74.2% |
| 3811740 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.52 | 46.0 | 3.03e-01 | 100.0% | 24.1% |
| 5000388 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.51 | 43.0 | 3.80e-01 | 98.2% | 82.2% |
| 5077356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 2.68e-01 | 70.2% | 30.4% |
| 3511169 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 36.0 | 3.29e-01 | 75.4% | 83.5% |
| 3330019 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.51 | 40.0 | 3.17e-01 | 86.0% | 80.9% |
| 3593220 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.34e-01 | 80.7% | 90.0% |