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IMGVR_UViG_3300042275_000783-3300042275-Ga0451658_001858_14987_15238

Arc-Vir

IMGVR_UViG_3300042275_000783-3300042275-Ga0451658_001858_14987_15238

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-79
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.79 68.0 6.36e-01 94.7% 86.2%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.76 66.0 6.33e-01 94.7% 83.9%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.76 66.0 6.02e-01 94.7% 76.8%
1a0pA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 67.0 6.32e-01 98.7% 85.7%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 64.0 5.61e-01 93.4% 70.3%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.69 61.0 4.88e-01 100.0% 82.5%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 50.0 5.37e-01 76.3% 100.0%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 48.0 4.46e-01 75.0% 92.8%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 49.0 4.39e-01 76.3% 90.3%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 36.0 3.35e-01 84.2% 40.0%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 49.0 4.36e-01 78.9% 97.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.63 47.0 5.12e-01 80.3% 98.4%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.63 46.0 4.53e-01 93.4% 73.4%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.62 50.0 5.19e-01 100.0% 95.8%
6q3wB02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.62 45.0 3.60e-01 80.3% 36.1%
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.61 53.0 4.36e-01 97.4% 63.4%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 53.0 4.40e-01 98.7% 77.0%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 50.0 3.88e-01 94.7% 89.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 39.0 4.07e-01 100.0% 71.8%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.59 51.0 4.50e-01 98.7% 100.0%
3c02A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.58 43.0 3.08e-01 80.3% 41.7%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.56 42.0 4.23e-01 81.6% 87.0%
5iduA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 42.0 3.69e-01 81.6% 60.8%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 48.0 3.74e-01 100.0% 48.6%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 49.0 3.78e-01 98.7% 49.1%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 44.0 3.86e-01 100.0% 57.4%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.55 44.0 4.25e-01 100.0% 76.7%
2rg8A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 38.0 3.07e-01 72.4% 36.7%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.55 47.0 4.07e-01 100.0% 85.7%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 39.0 3.63e-01 97.4% 57.4%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 40.0 4.20e-01 97.4% 92.4%
2f2bA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.55 40.0 2.90e-01 81.6% 40.4%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 47.0 4.52e-01 100.0% 89.7%
2dceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.49e-01 97.4% 93.4%
3vpzA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.54 45.0 3.45e-01 100.0% 60.5%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 48.0 3.96e-01 100.0% 57.6%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 45.0 3.84e-01 100.0% 83.0%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 46.0 3.90e-01 98.7% 64.6%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 41.0 4.06e-01 96.1% 78.3%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.52 43.0 3.81e-01 92.1% 96.6%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 44.0 3.84e-01 100.0% 74.8%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.52 41.0 3.33e-01 89.5% 66.9%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.52 36.0 3.47e-01 72.4% 67.4%
2yi9A05 1.20.1270.270 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain 0.52 32.0 3.28e-01 100.0% 62.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.51 40.0 3.61e-01 85.5% 90.6%
3busB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.10e-01 100.0% 92.1%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 42.0 3.30e-01 94.7% 60.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4220256 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 74.0 6.47e-01 98.7% 78.2%
4941150 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.81 72.0 6.11e-01 96.1% 66.7%
5072040 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 71.0 6.47e-01 96.1% 83.0%
5030306 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 70.0 6.49e-01 94.7% 83.2%
4997939 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.80 70.0 6.62e-01 94.7% 91.1%
4996189 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 72.0 6.40e-01 98.7% 78.1%
4932919 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 70.0 6.58e-01 94.7% 85.6%
5011489 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.80 71.0 6.52e-01 97.4% 76.8%
4473841 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 71.0 6.37e-01 98.7% 79.0%
5043403 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 70.0 6.35e-01 96.1% 77.0%
4966681 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.79 68.0 6.69e-01 93.4% 97.5%
4981576 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.79 68.0 6.43e-01 94.7% 86.7%
4142699 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 70.0 6.41e-01 98.7% 82.0%
4954526 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.78 67.0 5.86e-01 94.7% 82.6%
4168571 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 70.0 6.13e-01 98.7% 78.2%
4959184 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.77 68.0 6.30e-01 97.4% 85.3%
3956495 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.77 68.0 6.02e-01 98.7% 70.0%
4520087 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 68.0 6.22e-01 98.7% 83.0%
5028331 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.75 64.0 5.98e-01 94.7% 84.2%
5010451 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.75 64.0 5.69e-01 94.7% 82.7%
3621372 3345.1.1.2 alpha arrays › MRG domain › MRG domain › MRG domain › PCAF_N 0.75 66.0 5.44e-01 100.0% 94.3%
3510227 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.69 50.0 4.77e-01 77.6% 72.2%
4962699 101.1.2.924 alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.67 48.0 3.75e-01 100.0% 34.5%
4881420 2004.1.1.49 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.67 57.0 3.79e-01 97.4% 24.2%
4036926 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.66 54.0 5.51e-01 100.0% 90.7%
3955920 608.1.1.0 alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.66 53.0 4.73e-01 89.5% 100.0%
4929008 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.65 55.0 4.60e-01 97.4% 60.0%
3210963 5001.1.1.59 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sri 0.65 54.0 3.60e-01 92.1% 79.1%
3888953 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.65 51.0 4.95e-01 100.0% 75.3%
3243154 5001.1.1.59 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sri 0.65 53.0 3.56e-01 89.5% 73.2%
3604551 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.65 56.0 4.36e-01 97.4% 90.0%
4273496 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.64 57.0 5.61e-01 100.0% 92.5%
3229333 5001.1.1.59 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sri 0.63 53.0 3.53e-01 93.4% 79.7%
4125952 602.1.1.0 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like 0.63 52.0 3.33e-01 100.0% 19.4%
3711276 4015.1.1.1 alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.62 50.0 3.63e-01 92.1% 49.6%
4434935 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.61 53.0 4.34e-01 94.7% 55.0%
3292409 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.61 43.0 4.72e-01 75.0% 98.3%
3825757 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.61 44.0 4.71e-01 77.6% 96.9%
3626320 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.61 50.0 4.43e-01 90.8% 72.7%
3798329 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.61 49.0 4.36e-01 89.5% 70.0%
4289957 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 51.0 2.86e-01 100.0% 39.3%
3600083 4015.1.1.0 alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.60 53.0 3.74e-01 100.0% 44.5%
5082736 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.30e-01 82.9% 68.1%
5043878 102.3.1.1 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.60 47.0 4.63e-01 97.4% 78.8%
4636592 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.59 53.0 4.27e-01 98.7% 55.2%
4249322 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.59 52.0 4.97e-01 100.0% 93.3%
5044812 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.43e-01 89.5% 62.2%
4135840 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.58 46.0 2.95e-01 85.5% 56.6%
3529864 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.58 42.0 4.44e-01 75.0% 100.0%
3689393 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.56 49.0 4.35e-01 100.0% 87.0%
4972007 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.56 49.0 4.07e-01 100.0% 72.1%
3729854 109.49.1.1 alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.56 43.0 3.01e-01 84.2% 83.8%
4995049 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 44.0 3.27e-01 85.5% 77.4%
3276564 5043.1.1.22 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › PigN 0.55 44.0 3.38e-01 89.5% 63.8%
4987569 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.55 48.0 4.50e-01 100.0% 81.1%
5013436 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 41.0 3.01e-01 81.6% 72.7%
3797399 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 39.0 3.18e-01 100.0% 38.0%
4961715 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 47.0 3.51e-01 98.7% 85.4%
3286911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.95e-01 73.7% 85.7%
2329884 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.54 47.0 4.46e-01 100.0% 81.9%
4652719 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 37.0 3.50e-01 98.7% 58.9%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.53 45.0 4.34e-01 100.0% 94.4%