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IMGVR_UViG_3300042275_000783-3300042275-Ga0451658_001858_17970_18731
Arc-VirIMGVR_UViG_3300042275_000783-3300042275-Ga0451658_001858_17970_18731
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-177
Domain cluster:
rep: STL6-S73_scaffold_1_prodigal-single.1__X__X__00079__D1-144
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01507.26 best | PAPS_reduct | 38.9 | 1.30e-09 | 100.0% | 90.9% |
D2
high
residues 192-252
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 55.0 | 5.32e-01 | 91.8% | 80.9% |
| 2oexA02 | 1.20.140.50 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains | 0.65 | 56.0 | 3.96e-01 | 100.0% | 32.0% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.63 | 49.0 | 3.95e-01 | 88.5% | 43.3% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 43.0 | 4.47e-01 | 88.5% | 77.2% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 42.0 | 4.43e-01 | 78.7% | 81.5% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 49.0 | 4.22e-01 | 93.4% | 88.5% |
| 5a4uF02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 46.0 | 3.71e-01 | 83.6% | 57.9% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.60 | 47.0 | 3.64e-01 | 91.8% | 37.0% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.60 | 50.0 | 3.97e-01 | 98.4% | 45.6% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 46.0 | 4.61e-01 | 90.2% | 90.3% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 4.49e-01 | 80.3% | 87.9% |
| 3rvyA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.59 | 44.0 | 3.71e-01 | 88.5% | 45.6% |
| 3ceiA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.58 | 44.0 | 4.39e-01 | 82.0% | 90.5% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 49.0 | 3.16e-01 | 100.0% | 22.5% |
| 3h1nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 43.0 | 3.54e-01 | 83.6% | 68.3% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.57 | 43.0 | 4.33e-01 | 91.8% | 78.1% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 42.0 | 3.24e-01 | 82.0% | 54.9% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 41.0 | 3.90e-01 | 83.6% | 73.1% |
| 2pjpA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.99e-01 | 83.6% | 75.4% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.56 | 41.0 | 3.55e-01 | 80.3% | 89.1% |
| 2x43S00 | 6.10.140.1430 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 41.0 | 4.04e-01 | 83.6% | 73.1% |
| 1t8rA01 | 3.30.1730.10 | Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain | 0.55 | 42.0 | 3.16e-01 | 82.0% | 93.4% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.54 | 44.0 | 3.91e-01 | 88.5% | 96.6% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.54 | 43.0 | 3.02e-01 | 90.2% | 91.3% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.53 | 41.0 | 3.16e-01 | 86.9% | 82.8% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.53 | 40.0 | 3.89e-01 | 83.6% | 74.3% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4626442 | 7010.1.1.0 ↗ | alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator | 0.79 | 40.0 | 4.11e-01 | 100.0% | 51.7% |
| 4463728 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.67 | 55.0 | 3.53e-01 | 91.8% | 26.1% |
| 5038847 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 49.0 | 4.73e-01 | 91.8% | 68.6% |
| 5008319 | 605.1.1.10 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › SPOB_a | 0.67 | 53.0 | 5.22e-01 | 86.9% | 86.2% |
| 4009355 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.67 | 45.0 | 2.89e-01 | 70.5% | 15.5% |
| None | — | 0.65 | 45.0 | 2.85e-01 | 70.5% | 15.9% | |
| 3828 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.65 | 49.0 | 4.07e-01 | 82.0% | 66.1% |
| 3973396 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.64 | 46.0 | 4.07e-01 | 78.7% | 50.5% |
| 5049185 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.63 | 51.0 | 3.52e-01 | 93.4% | 24.8% |
| 5053090 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.63 | 50.0 | 5.05e-01 | 88.5% | 91.7% |
| 3276672 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.63 | 56.0 | 4.39e-01 | 100.0% | 68.5% |
| 5060201 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.63 | 54.0 | 4.34e-01 | 100.0% | 67.2% |
| 3743465 | 3184.1.1.1 ↗ | alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge | 0.63 | 46.0 | 4.51e-01 | 78.7% | 84.6% |
| 3811948 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.63 | 43.0 | 4.15e-01 | 88.5% | 62.9% |
| 3271597 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.62 | 50.0 | 3.05e-01 | 90.2% | 20.7% |
| 3269731 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 54.0 | 4.43e-01 | 100.0% | 92.2% |
| 4663904 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.62 | 49.0 | 4.27e-01 | 90.2% | 94.0% |
| 5050356 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 48.0 | 4.68e-01 | 88.5% | 80.0% |
| 3680153 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.62 | 50.0 | 4.29e-01 | 91.8% | 55.0% |
| 3263557 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 51.0 | 4.24e-01 | 100.0% | 87.5% |
| 3637481 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 50.0 | 3.38e-01 | 93.4% | 50.2% |
| 4876269 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.60 | 42.0 | 4.18e-01 | 72.1% | 80.6% |
| 3900975 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.60 | 51.0 | 4.07e-01 | 100.0% | 78.5% |
| 3956906 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.59 | 46.0 | 4.38e-01 | 93.4% | 72.0% |
| 5047797 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 47.0 | 4.40e-01 | 98.4% | 72.0% |
| 3617091 | 622.1.1.17 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › PF29509 | 0.59 | 49.0 | 4.52e-01 | 95.1% | 100.0% |
| 3481807 | 103.1.1.105 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › 2TM_P5A-ATPase | 0.58 | 43.0 | 4.24e-01 | 83.6% | 75.4% |
| 3267624 | 192.29.1.19 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon | 0.58 | 47.0 | 3.71e-01 | 90.2% | 94.1% |
| 3927597 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.57 | 50.0 | 4.04e-01 | 100.0% | 84.2% |
| 5000432 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.57 | 45.0 | 4.03e-01 | 88.5% | 96.7% |
| 3650596 | 603.1.1.61 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Mito_carr | 0.57 | 45.0 | 3.85e-01 | 91.8% | 65.5% |
| 3619546 | 3712.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 | 0.56 | 46.0 | 4.51e-01 | 88.5% | 83.1% |
| 3682039 | 604.1.1.188 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr | 0.56 | 45.0 | 3.85e-01 | 95.1% | 91.8% |
| 5081366 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.56 | 47.0 | 3.52e-01 | 98.4% | 41.2% |
| 3665738 | 109.4.1.630 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind,CNOT1_HEAT | 0.56 | 47.0 | 2.95e-01 | 100.0% | 70.5% |
| 3909150 | 5063.1.1.15 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA | 0.53 | 42.0 | 3.98e-01 | 86.9% | 73.3% |
| 3480326 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.53 | 45.0 | 3.65e-01 | 100.0% | 54.4% |
| 4669270 | 6026.1.1.42 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › CemA | 0.52 | 42.0 | 3.79e-01 | 88.5% | 67.1% |
| 3649982 | 109.4.1.636 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_HEAT | 0.51 | 42.0 | 3.05e-01 | 95.1% | 48.1% |
| 3954875 | 213.1.1.53 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_6 | 0.50 | 42.0 | 3.05e-01 | 96.7% | 32.6% |