←Back to structures

IMGVR_UViG_3300042767_000006-3300042767-Ga0482237_000536_1829_2098

Arc-Vir

IMGVR_UViG_3300042767_000006-3300042767-Ga0482237_000536_1829_2098

Identity

Kingdom:
archaea

Quality

81.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-88
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.78 33.0 3.80e-01 91.8% 53.6%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.74 35.0 3.24e-01 100.0% 36.3%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.69 34.0 2.89e-01 100.0% 28.3%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 36.0 3.17e-01 100.0% 39.6%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 29.0 3.24e-01 98.6% 58.9%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 35.0 2.90e-01 100.0% 36.3%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.33e-01 71.2% 100.0%
1o9yC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.53 27.0 2.76e-01 90.4% 43.1%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.51 23.0 2.84e-01 91.8% 51.2%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.50 35.0 3.16e-01 95.9% 48.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.80 37.0 3.65e-01 100.0% 41.2%
5051954 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 34.0 3.32e-01 97.3% 46.3%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 31.0 3.13e-01 100.0% 48.0%
3566649 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.61 34.0 4.06e-01 80.8% 88.9%
4107395 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.60 38.0 3.81e-01 86.3% 61.3%
2875038 3993.1.1.1 ↗ few secondary structure elements › C-P lyase subunit PhnJ C-terminal Zn-binding domain › C-P lyase subunit PhnJ C-terminal Zn-binding domain › C-P lyase subunit PhnJ C-terminal Zn-binding domain › PhnJ 0.60 32.0 3.85e-01 84.9% 80.4%
991007 1.1.10.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.58 29.0 2.95e-01 90.4% 43.2%
3251791 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 36.0 3.21e-01 100.0% 44.8%
3796100 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 34.0 2.74e-01 100.0% 29.3%
3225764 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.55 34.0 3.70e-01 95.9% 76.7%
5042375 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.54 36.0 3.57e-01 100.0% 65.3%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 27.0 3.12e-01 83.6% 65.5%
3953113 101.1.2.246 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_PafC 0.52 32.0 2.67e-01 82.2% 33.1%
3859153 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.52 40.0 3.42e-01 90.4% 50.0%
3839570 601.51.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › FliS_cochap 0.52 36.0 3.03e-01 95.9% 38.6%
3970714 1.1.10.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.52 27.0 2.61e-01 90.4% 38.6%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 31.0 3.48e-01 91.8% 74.1%
4681706 1046.1.1.1 ↗ alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 0.51 40.0 3.16e-01 86.3% 72.0%
3622287 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.51 42.0 2.66e-01 93.2% 25.5%
3063008 6081.1.1.1 ↗ a+b two layers › Pro-domain of Hemolysin hlyA › Pro-domain of Hemolysin hlyA › Pro-domain of Hemolysin hlyA › Hemolysin_N 0.51 35.0 3.06e-01 97.3% 49.1%
3774043 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 40.0 2.22e-01 89.0% 10.8%
4955560 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 29.0 3.26e-01 90.4% 74.5%
3249338 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.50 41.0 2.89e-01 93.2% 49.4%