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IMGVR_UViG_3300043113_000230-3300043113-Ga0484784_005335_3077_4240
Arc-VirIMGVR_UViG_3300043113_000230-3300043113-Ga0484784_005335_3077_4240
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-236
Domain cluster:
rep: SRR1747045_scaffold_1_prodigal-single.1__X__X__00037__D553-737
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fufB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 34.0 | 3.47e-01 | 91.7% | 54.1% |
| 6whcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 38.0 | 3.55e-01 | 91.2% | 53.0% |
| 3sylA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 30.0 | 2.93e-01 | 90.1% | 44.2% |
| 1m2oA05 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 29.0 | 3.71e-01 | 88.4% | 85.7% |
| 3cj1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 38.0 | 4.07e-01 | 91.7% | 80.1% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.55 | 32.0 | 3.67e-01 | 89.0% | 75.9% |
| 1mjhB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 35.0 | 3.92e-01 | 99.4% | 79.2% |
| 4q4hA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.53 | 44.0 | 3.65e-01 | 89.0% | 92.1% |
| 2dumC00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 34.0 | 3.76e-01 | 95.0% | 84.2% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 29.0 | 3.45e-01 | 70.2% | 80.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065401 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.93 | 74.0 | 4.82e-01 | 98.3% | 22.6% |
| 5044308 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.92 | 74.0 | 4.88e-01 | 98.9% | 24.6% |
| 4942624 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.92 | 73.0 | 5.36e-01 | 98.3% | 35.8% |
| 4961008 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 73.0 | 4.84e-01 | 98.3% | 24.5% |
| 4970624 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 73.0 | 4.96e-01 | 100.0% | 26.8% |
| 3603295 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 70.0 | 4.71e-01 | 100.0% | 25.3% |
| 5048774 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 72.0 | 4.82e-01 | 100.0% | 24.9% |
| 5053026 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 72.0 | 4.98e-01 | 100.0% | 28.7% |
| 4976938 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.90 | 73.0 | 4.80e-01 | 100.0% | 24.1% |
| 4987959 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.89 | 69.0 | 4.75e-01 | 100.0% | 27.6% |
| 5037353 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.89 | 73.0 | 4.86e-01 | 100.0% | 25.3% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.89 | 72.0 | 4.84e-01 | 100.0% | 26.4% |
| 5079907 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.88 | 72.0 | 4.83e-01 | 100.0% | 25.6% |
| 5051505 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 68.0 | 4.85e-01 | 98.3% | 31.8% |
| 5004456 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 70.0 | 4.62e-01 | 100.0% | 23.7% |
| 4974476 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.84 | 70.0 | 4.63e-01 | 100.0% | 24.2% |
| 4895332 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.81 | 68.0 | 4.72e-01 | 98.3% | 30.5% |
| 4895340 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.81 | 67.0 | 4.68e-01 | 98.3% | 30.1% |
| 5076048 | 2006.1.4.55 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NRDD | 0.79 | 50.0 | 4.67e-01 | 89.5% | 52.3% |
| 4102147 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.57 | 46.0 | 4.47e-01 | 85.1% | 90.7% |
| 4206404 | 103.4.1.26 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding | 0.55 | 30.0 | 3.96e-01 | 100.0% | 98.9% |
| 3688078 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.54 | 32.0 | 3.12e-01 | 94.5% | 52.8% |
| 3203047 | 2006.1.4.29 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN-like_DDX60 | 0.51 | 42.0 | 3.99e-01 | 97.2% | 73.8% |
| 3786152 | 2005.1.1.79 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF29926 | 0.51 | 35.0 | 3.57e-01 | 95.6% | 69.6% |
| 5056293 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.51 | 34.0 | 3.20e-01 | 89.0% | 55.1% |
| 3979535 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 28.0 | 2.50e-01 | 91.2% | 35.4% |
D2
medium
residues 1-15_287-387
Domain cluster:
rep: BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00126__D230-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 74.1 | 1.50e-20 | 83.6% | 16.7% |